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Commit d9b05b58 authored by Ruben Vorderman's avatar Ruben Vorderman
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2GB per thread is sufficient

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...@@ -30,7 +30,7 @@ task Mem { ...@@ -30,7 +30,7 @@ task Mem {
Int threads = 4 Int threads = 4
Int sortThreads = 1 Int sortThreads = 1
Int sortMemoryPerThreadGb = 4 Int sortMemoryPerThreadGb = 2
Int compressionLevel = 1 Int compressionLevel = 1
# BWA needs slightly more memory than the size of the index files (~10%). Add a margin for safety here. # BWA needs slightly more memory than the size of the index files (~10%). Add a margin for safety here.
Int memoryGb = 1 + ceil(size(bwaIndex.indexFiles, "G") * 1.2) + sortMemoryPerThreadGb * sortThreads Int memoryGb = 1 + ceil(size(bwaIndex.indexFiles, "G") * 1.2) + sortMemoryPerThreadGb * sortThreads
...@@ -95,7 +95,7 @@ task Kit { ...@@ -95,7 +95,7 @@ task Kit {
Int threads = 4 Int threads = 4
Int sortThreads = 1 Int sortThreads = 1
Int sortMemoryPerThreadGb = 4 Int sortMemoryPerThreadGb = 2
Int compressionLevel = 1 Int compressionLevel = 1
# BWA needs slightly more memory than the size of the index files (~10%). Add a margin for safety here. # BWA needs slightly more memory than the size of the index files (~10%). Add a margin for safety here.
Int memoryGb = 1 + ceil(size(bwaIndex.indexFiles, "G") * 1.2) + sortMemoryPerThreadGb * sortThreads Int memoryGb = 1 + ceil(size(bwaIndex.indexFiles, "G") * 1.2) + sortMemoryPerThreadGb * sortThreads
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