@@ -11,6 +11,8 @@ that users understand how the changes affect the new version.
version 1.0.0-dev
---------------------------
+ Fastqsplitter: use version 1.1.
+ Picard: Use version 2.20.5 of the biocontainer as this includes the R dependency
+ GATK: Add CombineVariants task that allows, e.g., to merge VCFs from different callers.
+ Mutect2: Add GATK tasks related to variant filtering (LearnReadOrientationModel, MergeStats, GetPileupSummaries, CalculateContamination and FilterMutectCalls).
+ Mutect2: Add "--germline-resource" and "--f1r2-tar-gz" inputs, requiring an update to GATK 4.1.2.0.
