Revert update CutAdapt.

.travis.yml

@@ -19,4 +19,5 @@ before_install:
 install:
   - conda install --file requirements-test.txt
 
-script: bash scripts/biowdl_lint.sh
+script:
+  - bash scripts/biowdl_lint.sh

CHANGELOG.md

@@ -16,7 +16,6 @@ version 5.0.0-dev
 + Update Picard to version 2.23.8.
 + Update NanoPlot to version 1.32.1.
 + Update MultiQC to version 1.9.
-+ Update CutAdapt to version 3.0.0.
 + Update StringTie to version 2.1.4.
 + Complete `parameter_meta` for tasks missing the outputs.
 + DeepVariant: Add an optional input for the gvcf index.

VERSION

-4.1.0
+5.0.0

cutadapt.wdl

@@ -85,7 +85,7 @@ task Cutadapt {
         Int cores = 4
         String memory = "~{300 + 100 * cores}M"
         Int timeMinutes = 1 + ceil(size([read1, read2], "G")  * 12.0 / cores)
-        String dockerImage = "quay.io/biocontainers/cutadapt:3.0--py37hf01694f_0"
+        String dockerImage = "quay.io/biocontainers/cutadapt:2.10--py37hf01694f_1"
     }
 
     String realRead2output = select_first([read2output, "cut_r2.fq.gz"])