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Commit 9af789ca authored by Cats's avatar Cats
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add makeStarRGline task

parent eab205b4
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1 merge request!15Biowdl 25
......@@ -47,4 +47,19 @@ task Star {
cpu: select_first([runThreadN, 1])
memory: select_first([memory, 10])
}
}
\ No newline at end of file
}
task makeStarRGline {
String sample
String library
String? platform
String readgroup
command {
printf '"ID:${readgroup}" "LB:${library}" "PL:${default="ILLUMINA" platform}" "SM:${sample}"'
}
output {
String rgLine = read_string(stdout())
}
}
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