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Commit 960aa3cf authored by Ruben Vorderman's avatar Ruben Vorderman
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Slightly less records in RAM

parent 58682093
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......@@ -1038,7 +1038,7 @@ task UmiAwareMarkDuplicatesWithMateCigar {
String outputPath
String outputPathMetrics = outputPath + ".metrics"
String outputPathUmiMetrics = outputPath + ".umi-metrics"
Int maxRecordsInRam = 3000000 # Default is 500_000 but that will lead to very small files on disk.
Int maxRecordsInRam = 1500000 # Default is 500_000 but that will lead to very small files on disk.
String? assumeSortOrder
String tempdir = "temp"
Boolean removeDuplicates = true
......
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