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Unverified Commit 903ce915 authored by Cats's avatar Cats Committed by GitHub
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Merge branch 'develop' into macs2

parents 2c5b6d2a 26e020d6
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1 merge request!29Macs2
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...@@ -73,6 +73,7 @@ task BaseCounter { ...@@ -73,6 +73,7 @@ task BaseCounter {
task ExtractAdaptersFastqc { task ExtractAdaptersFastqc {
File? toolJar File? toolJar
String? preCommand
File inputFile File inputFile
String outputDir String outputDir
String? adapterOutputFilePath = outputDir + "/adapter.list" String? adapterOutputFilePath = outputDir + "/adapter.list"
...@@ -93,6 +94,7 @@ task ExtractAdaptersFastqc { ...@@ -93,6 +94,7 @@ task ExtractAdaptersFastqc {
command { command {
set -e set -e
${preCommand}
mkdir -p ${outputDir} mkdir -p ${outputDir}
${toolCommand} \ ${toolCommand} \
--inputFile ${inputFile} \ --inputFile ${inputFile} \
......
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