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Commit 8fcd2e25 authored by Cats's avatar Cats
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add linx visualisation output

parent f2cc5cc0
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......@@ -632,7 +632,7 @@ task LinxVisualisations {
String memory = "9G"
String javaXmx = "8G"
Int timeMinutes = 10
Int timeMinutes = 60
String dockerImage = "quay.io/biocontainers/hmftools-linx:1.18--hdfd78af_0"
}
......@@ -647,12 +647,13 @@ task LinxVisualisations {
-circos /usr/local/bin/circos \
-vis_file_dir ~{sub(linxOutput[0], basename(linxOutput[0]), "")} \
-data_out ~{outputDir}/circos \
-plot_out ~{outputDir}/plot \
-plot_out ~{outputDir}/plots \
~{if plotReportable then "-plot_reportable" else ""}
}
output {
Array[File] circos = glob("~{outputDir}/circos/*")
Array[File] plots = glob("~{outputDir}/plots/*"
}
runtime {
......
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