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Commit 8df42e20 authored by Ruben Vorderman's avatar Ruben Vorderman
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do not require indexes on the markdup task

parent 2c4dd54c
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......@@ -462,7 +462,6 @@ task GatherVcfs {
task MarkDuplicates {
input {
Array[File]+ inputBams
Array[File] inputBamIndexes
String outputBamPath
String metricsPath
Int compressionLevel = 1
......@@ -519,7 +518,6 @@ task MarkDuplicates {
parameter_meta {
# inputs
inputBams: {description: "The BAM files for which the duplicate reads should be marked.", category: "required"}
inputBamIndexes: {description: "Th eindexes for the input BAM files.", category: "required"}
outputBamPath: {description: "The location where the ouptut BAM file should be written.", category: "required"}
metricsPath: {description: "The location where the output metrics file should be written.", category: "required"}
read_name_regex: {description: "Equivalent to the `READ_NAME_REGEX` option of MarkDuplicates.", category: "advanced"}
......
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