Skip to content
Snippets Groups Projects
Unverified Commit 8a02fc35 authored by Jasper's avatar Jasper Committed by GitHub
Browse files

Update bwa-mem2.wdl

parent 38514b1d
No related branches found
No related tags found
No related merge requests found
......@@ -34,8 +34,8 @@ task Mem {
String? readgroup
Int? sortThreads
Int? memoryGb
Int threads = 4
Int? memoryGb
Int timeMinutes = 1 + ceil(size([read1, read2], "G") * 220 / threads)
# Contains bwa-mem2 2.0 bwakit 0.7.17.dev1 and samtools 1.10.
String dockerImage = "quay.io/biocontainers/mulled-v2-6a15c99309c82b345497d24489bee67bbb76c2f6:1c9c3227b9bf825a8dc9726a25701aa23c0b1f12-0"
......@@ -101,8 +101,8 @@ task Mem {
compressionLevel: {description: "The compression level of the output BAM.", category: "advanced"}
readgroup: {description: "A readgroup identifier.", category: "common"}
sortThreads: {description: "The number of threads to use for sorting.", category: "advanced"}
memoryGb: {description: "The amount of memory this job will use in gigabytes.", category: "advanced"}
threads: {description: "The number of threads to use for alignment.", category: "advanced"}
memoryGb: {description: "The amount of memory this job will use in gigabytes.", category: "advanced"}
timeMinutes: {description: "The maximum amount of time the job will run in minutes.", category: "advanced"}
dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"}
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment