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Commit 8993b5c6 authored by Ruben Vorderman's avatar Ruben Vorderman
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Use gebibytes instead of gigabytes

parent 24cc6213
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...@@ -66,7 +66,7 @@ task Unicycler { ...@@ -66,7 +66,7 @@ task Unicycler {
String? lowScore String? lowScore
Int threads = 1 Int threads = 1
String memory = "4G" String memory = "4GiB"
} }
command { command {
......
...@@ -48,7 +48,7 @@ task VarDict { ...@@ -48,7 +48,7 @@ task VarDict {
String javaXmx = "16G" String javaXmx = "16G"
Int threads = 1 Int threads = 1
String memory = "18G" String memory = "18GiB"
Int timeMinutes = 300 Int timeMinutes = 300
String dockerImage = "quay.io/biocontainers/vardict-java:1.5.8--1" String dockerImage = "quay.io/biocontainers/vardict-java:1.5.8--1"
} }
......
...@@ -29,7 +29,7 @@ task Normalize { ...@@ -29,7 +29,7 @@ task Normalize {
Boolean ignoreMaskedRef = false Boolean ignoreMaskedRef = false
String outputPath = "./vt/normalized_decomposed.vcf" String outputPath = "./vt/normalized_decomposed.vcf"
String memory = "4G" String memory = "4GiB"
Int timeMinutes = 30 Int timeMinutes = 30
String dockerImage = "quay.io/biocontainers/vt:0.57721--hdf88d34_2" String dockerImage = "quay.io/biocontainers/vt:0.57721--hdf88d34_2"
} }
......
...@@ -38,7 +38,7 @@ task Phase { ...@@ -38,7 +38,7 @@ task Phase {
String? threshold String? threshold
String? ped String? ped
String memory = "4G" String memory = "4GiB"
Int timeMinutes = 120 Int timeMinutes = 120
# Whatshap 1.0, tabix 0.2.5. # Whatshap 1.0, tabix 0.2.5.
String dockerImage = "quay.io/biocontainers/mulled-v2-5c61fe1d8c284dd05d26238ce877aa323205bf82:89b4005d04552bdd268e8af323df83357e968d83-0" String dockerImage = "quay.io/biocontainers/mulled-v2-5c61fe1d8c284dd05d26238ce877aa323205bf82:89b4005d04552bdd268e8af323df83357e968d83-0"
...@@ -109,7 +109,7 @@ task Stats { ...@@ -109,7 +109,7 @@ task Stats {
String? blockList String? blockList
String? chromosome String? chromosome
String memory = "4G" String memory = "4GiB"
Int timeMinutes = 120 Int timeMinutes = 120
# Whatshap 1.0, tabix 0.2.5. # Whatshap 1.0, tabix 0.2.5.
String dockerImage = "quay.io/biocontainers/mulled-v2-5c61fe1d8c284dd05d26238ce877aa323205bf82:89b4005d04552bdd268e8af323df83357e968d83-0" String dockerImage = "quay.io/biocontainers/mulled-v2-5c61fe1d8c284dd05d26238ce877aa323205bf82:89b4005d04552bdd268e8af323df83357e968d83-0"
...@@ -169,7 +169,7 @@ task Haplotag { ...@@ -169,7 +169,7 @@ task Haplotag {
String? regions String? regions
String? sample String? sample
String memory = "4G" String memory = "4GiB"
Int timeMinutes = 120 Int timeMinutes = 120
# Whatshap 1.0, tabix 0.2.5. # Whatshap 1.0, tabix 0.2.5.
String dockerImage = "quay.io/biocontainers/mulled-v2-5c61fe1d8c284dd05d26238ce877aa323205bf82:89b4005d04552bdd268e8af323df83357e968d83-0" String dockerImage = "quay.io/biocontainers/mulled-v2-5c61fe1d8c284dd05d26238ce877aa323205bf82:89b4005d04552bdd268e8af323df83357e968d83-0"
......
...@@ -31,7 +31,7 @@ task Count { ...@@ -31,7 +31,7 @@ task Count {
Int? binSize Int? binSize
File? binFile File? binFile
String memory = "2G" String memory = "2GiB"
String dockerImage = "quay.io/biocontainers/wisestork:0.1.2--pyh24bf2e0_0" String dockerImage = "quay.io/biocontainers/wisestork:0.1.2--pyh24bf2e0_0"
} }
...@@ -69,7 +69,7 @@ task GcCorrect { ...@@ -69,7 +69,7 @@ task GcCorrect {
Int? iter Int? iter
Float? fracLowess Float? fracLowess
String memory = "2G" String memory = "2GiB"
String dockerImage = "quay.io/biocontainers/wisestork:0.1.2--pyh24bf2e0_0" String dockerImage = "quay.io/biocontainers/wisestork:0.1.2--pyh24bf2e0_0"
} }
...@@ -129,7 +129,7 @@ task Newref { ...@@ -129,7 +129,7 @@ task Newref {
} }
runtime { runtime {
memory: "~{memory}G" memory: "~{memory}GiB"
docker: dockerImage docker: dockerImage
} }
} }
...@@ -147,7 +147,7 @@ task Zscore { ...@@ -147,7 +147,7 @@ task Zscore {
Int? binSize Int? binSize
File? binFile File? binFile
String memory = "2G" String memory = "2GiB"
String dockerImage = "quay.io/biocontainers/wisestork:0.1.2--pyh24bf2e0_0" String dockerImage = "quay.io/biocontainers/wisestork:0.1.2--pyh24bf2e0_0"
} }
......
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