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Commit 8993b5c6 authored by Ruben Vorderman's avatar Ruben Vorderman
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Use gebibytes instead of gigabytes

parent 24cc6213
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......@@ -66,7 +66,7 @@ task Unicycler {
String? lowScore
Int threads = 1
String memory = "4G"
String memory = "4GiB"
}
command {
......
......@@ -48,7 +48,7 @@ task VarDict {
String javaXmx = "16G"
Int threads = 1
String memory = "18G"
String memory = "18GiB"
Int timeMinutes = 300
String dockerImage = "quay.io/biocontainers/vardict-java:1.5.8--1"
}
......
......@@ -29,7 +29,7 @@ task Normalize {
Boolean ignoreMaskedRef = false
String outputPath = "./vt/normalized_decomposed.vcf"
String memory = "4G"
String memory = "4GiB"
Int timeMinutes = 30
String dockerImage = "quay.io/biocontainers/vt:0.57721--hdf88d34_2"
}
......
......@@ -38,7 +38,7 @@ task Phase {
String? threshold
String? ped
String memory = "4G"
String memory = "4GiB"
Int timeMinutes = 120
# Whatshap 1.0, tabix 0.2.5.
String dockerImage = "quay.io/biocontainers/mulled-v2-5c61fe1d8c284dd05d26238ce877aa323205bf82:89b4005d04552bdd268e8af323df83357e968d83-0"
......@@ -109,7 +109,7 @@ task Stats {
String? blockList
String? chromosome
String memory = "4G"
String memory = "4GiB"
Int timeMinutes = 120
# Whatshap 1.0, tabix 0.2.5.
String dockerImage = "quay.io/biocontainers/mulled-v2-5c61fe1d8c284dd05d26238ce877aa323205bf82:89b4005d04552bdd268e8af323df83357e968d83-0"
......@@ -169,7 +169,7 @@ task Haplotag {
String? regions
String? sample
String memory = "4G"
String memory = "4GiB"
Int timeMinutes = 120
# Whatshap 1.0, tabix 0.2.5.
String dockerImage = "quay.io/biocontainers/mulled-v2-5c61fe1d8c284dd05d26238ce877aa323205bf82:89b4005d04552bdd268e8af323df83357e968d83-0"
......
......@@ -31,7 +31,7 @@ task Count {
Int? binSize
File? binFile
String memory = "2G"
String memory = "2GiB"
String dockerImage = "quay.io/biocontainers/wisestork:0.1.2--pyh24bf2e0_0"
}
......@@ -69,7 +69,7 @@ task GcCorrect {
Int? iter
Float? fracLowess
String memory = "2G"
String memory = "2GiB"
String dockerImage = "quay.io/biocontainers/wisestork:0.1.2--pyh24bf2e0_0"
}
......@@ -129,7 +129,7 @@ task Newref {
}
runtime {
memory: "~{memory}G"
memory: "~{memory}GiB"
docker: dockerImage
}
}
......@@ -147,7 +147,7 @@ task Zscore {
Int? binSize
File? binFile
String memory = "2G"
String memory = "2GiB"
String dockerImage = "quay.io/biocontainers/wisestork:0.1.2--pyh24bf2e0_0"
}
......
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