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biowdl
tasks
Commits
8993b5c6
Commit
8993b5c6
authored
2 years ago
by
Ruben Vorderman
Browse files
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Plain Diff
Use gebibytes instead of gigabytes
parent
24cc6213
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Changes
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5 changed files
unicycler.wdl
+1
-1
1 addition, 1 deletion
unicycler.wdl
vardict.wdl
+1
-1
1 addition, 1 deletion
vardict.wdl
vt.wdl
+1
-1
1 addition, 1 deletion
vt.wdl
whatshap.wdl
+3
-3
3 additions, 3 deletions
whatshap.wdl
wisestork.wdl
+4
-4
4 additions, 4 deletions
wisestork.wdl
with
10 additions
and
10 deletions
unicycler.wdl
+
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−
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8993b5c6
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@@ -66,7 +66,7 @@ task Unicycler {
String? lowScore
Int threads = 1
String memory = "4G"
String memory = "4G
iB
"
}
command {
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vardict.wdl
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8993b5c6
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@@ -48,7 +48,7 @@ task VarDict {
String javaXmx = "16G"
Int threads = 1
String memory = "18G"
String memory = "18G
iB
"
Int timeMinutes = 300
String dockerImage = "quay.io/biocontainers/vardict-java:1.5.8--1"
}
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vt.wdl
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8993b5c6
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@@ -29,7 +29,7 @@ task Normalize {
Boolean ignoreMaskedRef = false
String outputPath = "./vt/normalized_decomposed.vcf"
String memory = "4G"
String memory = "4G
iB
"
Int timeMinutes = 30
String dockerImage = "quay.io/biocontainers/vt:0.57721--hdf88d34_2"
}
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whatshap.wdl
+
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−
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8993b5c6
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@@ -38,7 +38,7 @@ task Phase {
String? threshold
String? ped
String memory = "4G"
String memory = "4G
iB
"
Int timeMinutes = 120
# Whatshap 1.0, tabix 0.2.5.
String dockerImage = "quay.io/biocontainers/mulled-v2-5c61fe1d8c284dd05d26238ce877aa323205bf82:89b4005d04552bdd268e8af323df83357e968d83-0"
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@@ -109,7 +109,7 @@ task Stats {
String? blockList
String? chromosome
String memory = "4G"
String memory = "4G
iB
"
Int timeMinutes = 120
# Whatshap 1.0, tabix 0.2.5.
String dockerImage = "quay.io/biocontainers/mulled-v2-5c61fe1d8c284dd05d26238ce877aa323205bf82:89b4005d04552bdd268e8af323df83357e968d83-0"
...
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@@ -169,7 +169,7 @@ task Haplotag {
String? regions
String? sample
String memory = "4G"
String memory = "4G
iB
"
Int timeMinutes = 120
# Whatshap 1.0, tabix 0.2.5.
String dockerImage = "quay.io/biocontainers/mulled-v2-5c61fe1d8c284dd05d26238ce877aa323205bf82:89b4005d04552bdd268e8af323df83357e968d83-0"
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wisestork.wdl
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8993b5c6
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@@ -31,7 +31,7 @@ task Count {
Int? binSize
File? binFile
String memory = "2G"
String memory = "2G
iB
"
String dockerImage = "quay.io/biocontainers/wisestork:0.1.2--pyh24bf2e0_0"
}
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@@ -69,7 +69,7 @@ task GcCorrect {
Int? iter
Float? fracLowess
String memory = "2G"
String memory = "2G
iB
"
String dockerImage = "quay.io/biocontainers/wisestork:0.1.2--pyh24bf2e0_0"
}
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@@ -129,7 +129,7 @@ task Newref {
}
runtime {
memory: "~{memory}G"
memory: "~{memory}G
iB
"
docker: dockerImage
}
}
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@@ -147,7 +147,7 @@ task Zscore {
Int? binSize
File? binFile
String memory = "2G"
String memory = "2G
iB
"
String dockerImage = "quay.io/biocontainers/wisestork:0.1.2--pyh24bf2e0_0"
}
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