Merge branch 'update_scripts' of https://github.com/biowdl/tasks into update_scripts

CHANGELOG.md

@@ -9,9 +9,13 @@ This document is user facing. Please word the changes in such a way
 that users understand how the changes affect the new version.
 -->
 
-version 2.1.0-dev
+version 2.2.0-dev
 ---------------------------
-+ Make intervals optional for GATK CombineGVCFs
++ Update TALON default image to version 4.4.1.
+
+version 2.1.0
+---------------------------
++ Make intervals optional for GATK CombineGVCFs.
 + Updated biowdl-input-converter version.
 + GATK CombineGVCFs memory was tripled to prevent it from using a lot of CPU in
   Garbage Collection mode.

VERSION

-2.1.0
+2.2.0

talon.wdl

@@ -32,7 +32,7 @@ task CreateAbundanceFileFromDatabase {
 
         Int cores = 1
         String memory = "4G"
-        String dockerImage = "biocontainers/talon:v4.4_cv1"
+        String dockerImage = "biocontainers/talon:v4.4.1_cv1"
     }
 
     command {
@@ -102,7 +102,7 @@ task CreateGtfFromDatabase {
 
         Int cores = 1
         String memory = "4G"
-        String dockerImage = "biocontainers/talon:v4.4_cv1"
+        String dockerImage = "biocontainers/talon:v4.4.1_cv1"
     }
 
     command {
@@ -174,7 +174,7 @@ task FilterTalonTranscripts {
 
         Int cores = 1
         String memory = "4G"
-        String dockerImage = "biocontainers/talon:v4.4_cv1"
+        String dockerImage = "biocontainers/talon:v4.4.1_cv1"
     }
 
     command {
@@ -227,7 +227,7 @@ task GetReadAnnotations {
 
         Int cores = 1
         String memory = "4G"
-        String dockerImage = "biocontainers/talon:v4.4_cv1"
+        String dockerImage = "biocontainers/talon:v4.4.1_cv1"
     }
 
     command {
@@ -287,7 +287,7 @@ task InitializeTalonDatabase {
 
         Int cores = 1
         String memory = "10G"
-        String dockerImage = "biocontainers/talon:v4.4_cv1"
+        String dockerImage = "biocontainers/talon:v4.4.1_cv1"
     }
 
     command {
@@ -360,7 +360,7 @@ task ReformatGtf {
 
         Int cores = 1
         String memory = "4G"
-        String dockerImage = "biocontainers/talon:v4.4_cv1"
+        String dockerImage = "biocontainers/talon:v4.4.1_cv1"
     }
 
     command {
@@ -397,7 +397,7 @@ task SummarizeDatasets {
 
         Int cores = 1
         String memory = "4G"
-        String dockerImage = "biocontainers/talon:v4.4_cv1"
+        String dockerImage = "biocontainers/talon:v4.4.1_cv1"
     }
 
     command {
@@ -458,7 +458,7 @@ task Talon {
 
         Int cores = 4
         String memory = "20G"
-        String dockerImage = "biocontainers/talon:v4.4_cv1"
+        String dockerImage = "biocontainers/talon:v4.4.1_cv1"
     }
 
     command {