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Commit 51068660 authored by Ruben Vorderman's avatar Ruben Vorderman
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add missed_introns output

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1 merge request!71Add gffcompare
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...@@ -75,6 +75,8 @@ task GffCompare { ...@@ -75,6 +75,8 @@ task GffCompare {
File loci = totalPrefix + ".loci" File loci = totalPrefix + ".loci"
File stats = totalPrefix + ".stats" File stats = totalPrefix + ".stats"
File tracking = totalPrefix + ".tracking" File tracking = totalPrefix + ".tracking"
# noneFile is not stable. Please replace this as soon as wdl spec allows
File? redundant = if createRedundant then totalPrefix + ".redundant.gtf" else noneFile File? redundant = if createRedundant then totalPrefix + ".redundant.gtf" else noneFile
File? missedIntrons = if debugMode then totalPrefix + ".missed_introns.gtf" else noneFile
} }
} }
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