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Commit 4e2fbd50 authored by Peter van 't Hof's avatar Peter van 't Hof
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Fix tool name

parent 3c6e0b7f
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1 merge request!54Added alt post script
......@@ -23,7 +23,7 @@ task Mem {
else "picard -Xmx" + picardMemory + "G"
String altCommand = if (defined(bwaIndex.altIndex)) then "| bwa-postalt " + bwaIndex.altIndex + " | " +
picardCommand + " SetNmAndUqTags " +
picardCommand + " SetNmMdAndUqTags " +
" INPUT=/dev/stdin OUTPUT=/dev/stdout" +
" R=" + bwaIndex.fastaFile else ""
......
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