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Commit 4b8cd7a8 authored by Ruben Vorderman's avatar Ruben Vorderman
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cutadapt only accepts arrays with at least one item for adapters

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2 merge requests!9Changes for virus assembly pipeline,!10Extra tasks required for assembly.
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cutadapt.wdl
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...@@ -7,12 +7,12 @@ task cutadapt { ...@@ -7,12 +7,12 @@ task cutadapt {
String? preCommand String? preCommand
Int? cores = 1 Int? cores = 1
String? memory = "4G" String? memory = "4G"
Array[String]? adapter Array[String]+? adapter
Array[String]? front Array[String]+? front
Array[String]? anywhere Array[String]+? anywhere
Array[String]? adapterRead2 Array[String]+? adapterRead2
Array[String]? frontRead2 Array[String]+? frontRead2
Array[String]? anywhereRead2 Array[String]+? anywhereRead2
Boolean? interleaved Boolean? interleaved
String? pairFilter String? pairFilter
Float? errorRate Float? errorRate
......
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