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Commit 37faa1b4 authored by Ruben Vorderman's avatar Ruben Vorderman
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Use heredoc script

parent adb8a68c
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...@@ -65,25 +65,25 @@ jobs: ...@@ -65,25 +65,25 @@ jobs:
# Only check files that have changed from the base reference. # Only check files that have changed from the base reference.
# Womtool validate checks very slowly, so this saves a lot of time. # Womtool validate checks very slowly, so this saves a lot of time.
run: | run: |
bash -c " bash <<- SCRIPT
set -x set -x
for WDL_FILE in $(git diff --name-only origin/${{github.base_ref}} | grep -E '*.wdl$'); do for WDL_FILE in $(git diff --name-only origin/${{github.base_ref}} | grep -E '*.wdl$'); do
womtool validate $WDL_FILE womtool validate $WDL_FILE
done done
" SCRIPT
- name: run miniwdl check - name: run miniwdl check
run: bash -c 'miniwdl check $(git ls-files *.wdl)' run: bash -c 'miniwdl check $(git ls-files *.wdl)'
- name: Check copyright headers - name: Check copyright headers
run: | run: |
bash -c ' bash <<- SCRIPT
for WDL_FILE in $(git diff --name-only origin/${{github.base_ref}} | grep -E '*.wdl$'); do for WDL_FILE in $(git diff --name-only origin/${{github.base_ref}} | grep -E '*.wdl$'); do
grep Copyright $WDL_FILE || bash -c "echo No copyright header in $WDL_FILE && exit 1" grep Copyright $WDL_FILE || bash -c "echo No copyright header in $WDL_FILE && exit 1"
done done
' SCRIPT
- name: Check parameter_meta for inputs - name: Check parameter_meta for inputs
run: | run: |
bash -c " bash <<- SCRIPT
for WDL_FILE in $(git diff --name-only origin/${{github.base_ref}} | grep -E '*.wdl$'); do for WDL_FILE in $(git diff --name-only origin/${{github.base_ref}} | grep -E '*.wdl$'); do
wdl-aid --strict $WDL_FILE > /dev/null 2> wdl-aid_stderr || wdl-aid --strict $WDL_FILE > /dev/null 2> wdl-aid_stderr ||
if grep -z 'ValueError: Missing parameter_meta for inputs:' wdl-aid_stderr if grep -z 'ValueError: Missing parameter_meta for inputs:' wdl-aid_stderr
...@@ -91,4 +91,4 @@ jobs: ...@@ -91,4 +91,4 @@ jobs:
exit 1 exit 1
fi fi
done done
" SCRIPT
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