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Commit 1c8b5b26 authored by Peter van 't Hof's avatar Peter van 't Hof
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Made diploid optional

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...@@ -72,7 +72,7 @@ task RunSomatic { ...@@ -72,7 +72,7 @@ task RunSomatic {
index: runDir + "/results/variants/tumorSV.vcf.gz.tbi" index: runDir + "/results/variants/tumorSV.vcf.gz.tbi"
} }
IndexedVcfFile diploidSV = object { IndexedVcfFile? diploidSV = object {
file: runDir + "/results/variants/diploidSV.vcf.gz", file: runDir + "/results/variants/diploidSV.vcf.gz",
index: runDir + "/results/variants/diploidSV.vcf.gz.tbi" index: runDir + "/results/variants/diploidSV.vcf.gz.tbi"
} }
......
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