fix parameter_meta in clever

clever.wdl

@@ -93,15 +93,13 @@ task Prediction {
     }
 
     parameter_meta {
-        fiteredBam: {description: "The bam file where sequences less than 30bp were removed.", category: "advanced"}
-        indexedFiteredBam: {description: "The index of the filtered bam file.", category: "advanced"}
+        # inputs
+        bamFile: {description: "The bam file to process.", category: "required"}
+        bamIndex: {description: "The index bam file.", category: "required"}
         bwaIndex: {description: "The BWA index files.", category: "required"}
         predictions: {description: "The predicted deletions (VCF) from clever.", category: "advanced"}
         outputPath: {description: "The location the output VCF file should be written.", category: "common"}
         threads: {description: "The the number of threads required to run a program", category: "advanced"}
-        maxOffset: {description: "Maximum center distance between split-read and read-pair deletion to be considered identical", category: "advanced"}
-        maxLengthDiff: {description: "Maximum length difference between split-read and read-pair deletion to be considered identical ", category: "advanced"}
-        cleverMaxDelLength: {description: "Maximum deletion length to look for from clever predictions.", category: "advanced"}
         memory: {description: "The memory required to run the programs", category: "advanced"}
         dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"}
     }