Skip to content
Snippets Groups Projects
Commit 160ed6f2 authored by Ruben Vorderman's avatar Ruben Vorderman
Browse files

update picard

parent 7b7eb3da
No related branches found
No related tags found
No related merge requests found
......@@ -662,6 +662,7 @@ task SortSam {
# Default ram of 4 GB. Using 125001.0 to prevent an answer of
# 4.000000001 which gets rounded to 5.
# GATK Best practices uses 75000 here: https://github.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/blob/d2934ed656ade44801f9cfe1c0e78d4f80684b7b/PairedEndSingleSampleWf-fc-hg38.wdl#L778
Int XmxGb = ceil(maxRecordsInRam / 125001.0)
Int timeMinutes = 1 + ceil(size(inputBam, "G") * 2)
# A mulled container is needed to have both picard and bwa in one container.
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment