Merge branch 'develop' into fix_validateFastq
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- .gitignore 1 addition, 1 deletion.gitignore
- .travis.yml 3 additions, 2 deletions.travis.yml
- bioconda.wdl 12 additions, 7 deletionsbioconda.wdl
- biopet.wdl 195 additions, 164 deletionsbiopet.wdl
- bwa.wdl 35 additions, 27 deletionsbwa.wdl
- centrifuge.wdl 153 additions, 140 deletionscentrifuge.wdl
- common.wdl 43 additions, 41 deletionscommon.wdl
- cutadapt.wdl 106 additions, 100 deletionscutadapt.wdl
- fastqc.wdl 47 additions, 40 deletionsfastqc.wdl
- flash.wdl 23 additions, 19 deletionsflash.wdl
- gatk.wdl 157 additions, 141 deletionsgatk.wdl
- htseq.wdl 20 additions, 16 deletionshtseq.wdl
- macs2.wdl 16 additions, 12 deletionsmacs2.wdl
- mergecounts.wdl 18 additions, 14 deletionsmergecounts.wdl
- ncbi.wdl 58 additions, 48 deletionsncbi.wdl
- picard.wdl 173 additions, 154 deletionspicard.wdl
- samtools.wdl 87 additions, 70 deletionssamtools.wdl
- seqtk.wdl 23 additions, 18 deletionsseqtk.wdl
- spades.wdl 63 additions, 56 deletionsspades.wdl
- star.wdl 36 additions, 30 deletionsstar.wdl
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