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van Vliet
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@@ -332,29 +332,35 @@ Here below are some useful commands and examples:
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@@ -332,29 +332,35 @@ Here below are some useful commands and examples:
module av
module av
----------------------------------------------------------------------------------------------- /share/modulefiles ------------------------------------------------------------------------------------------------
----------------------------------------------------------------------------------------------- /share/modulefiles ------------------------------------------------------------------------------------------------
container/singularity/3.5.3/gcc.8.3.1 library/boost/1.72.0/gcc-8.3.1 library/mpi/openmpi/3.1.5/gcc-8.3.1 statistical/MATLAB/R2016b
container/singularity/3.5.3/gcc.8.3.1 library/cuda/10.2/gcc.8.3.1 mathematical/octave/libs/SuiteSparse/5.7.2/gcc-8.3.1 pharmaceutical/pirana/2.9.7
cryogenicEM/chimera/1.14/gcc-8.3.1 library/cuda/10.0/gcc.8.3.1 library/mpi/openmpi/4.0.2/gcc-8.3.1 statistical/MATLAB/R2018b
cryogenicEM/chimera/1.14/gcc-8.3.1 library/cuda/7.5/gcc.8.3.1 mathematical/octave/libs/arpack/3.7.0/gcc-8.3.1 pharmaceutical/pirana/2.9.8 (D)
cryogenicEM/ctffind/4.1.13/gcc-8.3.1 library/cuda/10.1/gcc.8.3.1 library/mpi/openmpi/4.0.3/gcc-8.3.1 statistical/MATLAB/R2019b
cryogenicEM/ctffind/4.1.13/gcc-8.3.1 library/cuda/8.0/gcc.8.3.1 mathematical/octave/libs/gl2ps/1.4.2/gcc-8.3.1 statistical/MATLAB/R2016b
cryogenicEM/eman2/2.31 library/cuda/10.2/gcc.8.3.1 library/pmi/openpmix/2.2.3/gcc-8.3.1 statistical/MATLAB/v93/MCR2017b
cryogenicEM/eman2/2.31 library/cuda/9.0/gcc.8.3.1 mathematical/octave/libs/glpk/4.65/gcc-8.3.1 statistical/MATLAB/R2018b
cryogenicEM/gctf/1.06 library/cuda/7.5/gcc.8.3.1 library/pmi/openpmix/3.1.4/gcc-8.3.1 statistical/MATLAB/v97/MCR2019b
cryogenicEM/gctf/1.06 library/cuda/9.1/gcc.8.3.1 mathematical/octave/libs/qhull/8.0.0/gcc-8.3.1 statistical/MATLAB/R2019b
cryogenicEM/imod/4.9.12 library/cuda/8.0/gcc.8.3.1 library/sparsehash/2.0.3/gcc-8.3.1 statistical/R/3.4.4/gcc.8.3.1
cryogenicEM/imod/4.9.12 library/cuda/9.2/gcc.8.3.1 mathematical/octave/libs/qrupdate/1.1.2/gcc-8.3.1 statistical/MATLAB/v93/MCR2017b
cryogenicEM/motioncor2/1.31 library/cuda/9.0/gcc.8.3.1 library/wxwidgets/3.1.3/gcc-8.3.1 statistical/R/3.5.3/gcc.8.3.1
cryogenicEM/motioncor2/1.31 library/cudnn/10.0/cudnn mathematical/octave/libs/sundials/5.3.0/gcc-8.3.1 statistical/MATLAB/v97/MCR2019b
cryogenicEM/relion/3.0.8/gcc-8.3.1 library/cuda/9.1/gcc.8.3.1 neuroImaging/Elastix/5.0.0/gcc-7.4.0 statistical/R/3.6.2/gcc.8.3.1
cryogenicEM/relion/3.0.8/gcc-8.3.1 library/cudnn/10.1/cudnn medicalImaging/minc-stuffs/0.1.25/gcc-8.3.1 statistical/R/3.4.4/gcc.8.3.1
cryogenicEM/relion/3.1-beta/gcc-8.3.1 library/cuda/9.2/gcc.8.3.1 neuroImaging/FSLeyes/0.32.3 statistical/R/4.0.0/gcc.8.3.1
cryogenicEM/relion/3.1-beta/gcc-8.3.1 library/cudnn/10.2/cudnn medicalImaging/minc-toolkit-v2/1.9.17/gcc-8.3.1 statistical/R/3.5.3/gcc.8.3.1
cryogenicEM/resmap/1.1.4 library/cudnn/10.0/cudnn neuroImaging/SimpleElastix/0.10.0/python3.6.8 statistical/RStudio/1.2.5033/gcc-8.3.1
cryogenicEM/resmap/1.1.4 library/cudnn/9.0/cudnn medicalImaging/minc2-simple/2.2.30/gcc-8.3.1 statistical/R/3.6.2/gcc.8.3.1
genomics/hmmer/openmpi-3.1.5/3.3/gcc-8.3.1 library/cudnn/10.1/cudnn neuroImaging/freesurfer/stable-pub-v6.0.0.patched system/go/1.13.7
genomics/hmmer/openmpi-3.1.5/3.3/gcc-8.3.1 library/cudnn/9.2/cudnn medicalImaging/pydpiper/2.0.9 statistical/R/4.0.0/gcc.8.3.1
genomics/ngs/bcftools/1.10.2/gcc-8.3.1 library/cudnn/10.2/cudnn neuroImaging/fsl/5.0.10 system/hwloc/1.11.13/gcc-8.3.1
genomics/ngs/bcftools/1.10.2/gcc-8.3.1 library/fltk/1.3.5/gcc-8.3.1 medicalImaging/pydpiper/2.0.14 (D) statistical/RStudio/1.2.5033/gcc-8.3.1
genomics/ngs/bcl2fastq/2.20.0 library/cudnn/9.0/cudnn neuroImaging/fsl/5.0.11 system/hwloc/2.1.0/gcc-8.3.1
genomics/ngs/bcl2fastq/2.20.0 library/ftgl/2.1.3/gcc-8.3.1 medicalImaging/pyminc/0.52 system/go/1.13.7
genomics/ngs/bedtools2/2.29.1/gcc-8.3.1 library/cudnn/9.2/cudnn neuroImaging/fsl/5.0.9 system/knem/1.1.3/gcc-8.3.1
genomics/ngs/bedtools2/2.29.1/gcc-8.3.1 library/gdal/2.4.4/gcc-8.3.1 neuroImaging/Elastix/5.0.0/gcc-7.4.0 system/hwloc/1.11.13/gcc-8.3.1
genomics/ngs/bwa/0.7.17/gcc-8.3.1 library/fltk/1.3.5/gcc-8.3.1 neuroImaging/fsl/6.0.0 system/python/2.7.17
genomics/ngs/bwa/0.7.17/gcc-8.3.1 library/gdal/3.0.4/gcc-8.3.1 neuroImaging/FSLeyes/0.32.3 system/hwloc/2.1.0/gcc-8.3.1
genomics/ngs/samtools/1.10/gcc-8.3.1 library/ftgl/2.1.3/gcc-8.3.1 neuroImaging/fsl/6.0.1 system/python/3.7.6
genomics/ngs/samtools/1.10/gcc-8.3.1 library/htslib/1.10.2/gcc-8.3.1 neuroImaging/SimpleElastix/0.10.0/python3.6.8 system/knem/1.1.3/gcc-8.3.1
genomics/ngs/shapeit4/4.1.3/gcc-8.3.1 library/gdal/2.4.4/gcc-8.3.1 neuroImaging/fsl/6.0.2 system/python/3.8.1 (D)
genomics/ngs/shapeit4/4.1.3/gcc-8.3.1 library/java/OpenJDK-11.0.2 neuroImaging/freesurfer/stable-pub-v6.0.0.patched system/python/2.7.17
genomics/ngs/vcftools/0.1.16/gcc-8.3.1 library/gdal/3.0.4/gcc-8.3.1 neuroImaging/fsl/6.0.3 tools/gitlab-runner/12.8.0
genomics/ngs/vcftools/0.1.16/gcc-8.3.1 library/java/OpenJDK-12.0.2 neuroImaging/freesurfer/7.1.0 (D) system/python/3.7.6
gwas/depict/1.rel194 library/htslib/1.10.2/gcc-8.3.1 neuroImaging/fsl/fix/1.06.12 tools/jupyterlab/4.3.1
graphics/gnuplot/5.2.8/gcc-8.3.1 library/java/OpenJDK-13.0.2 (D) neuroImaging/fsl/5.0.10 system/python/3.8.1 (D)
gwas/plink/1.07 library/java/OpenJDK-11.0.2 pharmaceutical/PsN/4.9.0 tools/miniconda/python2.7/4.7.12
graphics/graphicsmagick/1.3.35/gcc-8.3.1 library/lapack/3.9.0/gcc-8.3.1 neuroImaging/fsl/5.0.11 system/qt/5.14.2/gcc-8.3.1
gwas/plink/1.90b6.17 library/java/OpenJDK-12.0.2 pharmaceutical/nonmem/7.4.4/gcc-8.3.1 tools/miniconda/python3.7/4.7.12
gwas/depict/1.rel194 library/mpi/mpich/3.3.2/gcc-8.3.1 neuroImaging/fsl/5.0.9 system/swi-prolog/8.2.0
gwas/plink/1.90p library/java/OpenJDK-13.0.2 (D) pharmaceutical/pirana/2.9.7 tools/websockify/0.9.0
gwas/plink/1.07 library/mpi/openmpi/3.1.5/gcc-8.3.1 neuroImaging/fsl/6.0.0 tools/biomake/0.1.5
gwas/plink/2.00a3LM (D) library/mpi/mpich/3.3.2/gcc-8.3.1 pharmaceutical/pirana/2.9.8 (D)
gwas/plink/1.90b6.17 library/mpi/openmpi/4.0.2/gcc-8.3.1 neuroImaging/fsl/6.0.1 tools/cmake/3.11.4
gwas/plink/1.90p library/mpi/openmpi/4.0.3/gcc-8.3.1 neuroImaging/fsl/6.0.2 tools/gitlab-runner/12.8.0
gwas/plink/2.00a3LM (D) library/pmi/openpmix/2.2.3/gcc-8.3.1 neuroImaging/fsl/6.0.3 tools/jupyterlab/4.3.1
library/blas/0.3.10/gcc-8.3.1 library/pmi/openpmix/3.1.4/gcc-8.3.1 neuroImaging/fsl/fix/1.06.12 tools/luarocks/3.3.1/gcc-8.3.1
library/boost/1.72.0/gcc-8.3.1 library/sparsehash/2.0.3/gcc-8.3.1 neuroImaging/mrtrix/3.0.0/gcc-8.3.1 tools/miniconda/python2.7/4.7.12
library/cuda/10.0/gcc.8.3.1 library/wxwidgets/3.1.3/gcc-8.3.1 pharmaceutical/PsN/4.9.0 tools/miniconda/python3.7/4.7.12
library/cuda/10.1/gcc.8.3.1 mathematical/octave/5.2.0/gcc-8.3.1 pharmaceutical/nonmem/7.4.4/gcc-8.3.1 tools/websockify/0.9.0
-------------------------------------------------------------------------------------- /usr/share/lmod/lmod/modulefiles/Core --------------------------------------------------------------------------------------
-------------------------------------------------------------------------------------- /usr/share/lmod/lmod/modulefiles/Core --------------------------------------------------------------------------------------
lmod settarg
lmod settarg
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@@ -364,7 +370,6 @@ module av
...
@@ -364,7 +370,6 @@ module av
Use "module spider" to find all possible modules and extensions.
Use "module spider" to find all possible modules and extensions.
Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys".
Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys".
```
```
-
load a module
-
load a module
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