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Jun 24, 2020
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van Vliet
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@@ -332,29 +332,35 @@ Here below are some useful commands and examples:
module av
----------------------------------------------------------------------------------------------- /share/modulefiles ------------------------------------------------------------------------------------------------
container/singularity/3.5.3/gcc.8.3.1 library/boost/1.72.0/gcc-8.3.1 library/mpi/openmpi/3.1.5/gcc-8.3.1 statistical/MATLAB/R2016b
cryogenicEM/chimera/1.14/gcc-8.3.1 library/cuda/10.0/gcc.8.3.1 library/mpi/openmpi/4.0.2/gcc-8.3.1 statistical/MATLAB/R2018b
cryogenicEM/ctffind/4.1.13/gcc-8.3.1 library/cuda/10.1/gcc.8.3.1 library/mpi/openmpi/4.0.3/gcc-8.3.1 statistical/MATLAB/R2019b
cryogenicEM/eman2/2.31 library/cuda/10.2/gcc.8.3.1 library/pmi/openpmix/2.2.3/gcc-8.3.1 statistical/MATLAB/v93/MCR2017b
cryogenicEM/gctf/1.06 library/cuda/7.5/gcc.8.3.1 library/pmi/openpmix/3.1.4/gcc-8.3.1 statistical/MATLAB/v97/MCR2019b
cryogenicEM/imod/4.9.12 library/cuda/8.0/gcc.8.3.1 library/sparsehash/2.0.3/gcc-8.3.1 statistical/R/3.4.4/gcc.8.3.1
cryogenicEM/motioncor2/1.31 library/cuda/9.0/gcc.8.3.1 library/wxwidgets/3.1.3/gcc-8.3.1 statistical/R/3.5.3/gcc.8.3.1
cryogenicEM/relion/3.0.8/gcc-8.3.1 library/cuda/9.1/gcc.8.3.1 neuroImaging/Elastix/5.0.0/gcc-7.4.0 statistical/R/3.6.2/gcc.8.3.1
cryogenicEM/relion/3.1-beta/gcc-8.3.1 library/cuda/9.2/gcc.8.3.1 neuroImaging/FSLeyes/0.32.3 statistical/R/4.0.0/gcc.8.3.1
cryogenicEM/resmap/1.1.4 library/cudnn/10.0/cudnn neuroImaging/SimpleElastix/0.10.0/python3.6.8 statistical/RStudio/1.2.5033/gcc-8.3.1
genomics/hmmer/openmpi-3.1.5/3.3/gcc-8.3.1 library/cudnn/10.1/cudnn neuroImaging/freesurfer/stable-pub-v6.0.0.patched system/go/1.13.7
genomics/ngs/bcftools/1.10.2/gcc-8.3.1 library/cudnn/10.2/cudnn neuroImaging/fsl/5.0.10 system/hwloc/1.11.13/gcc-8.3.1
genomics/ngs/bcl2fastq/2.20.0 library/cudnn/9.0/cudnn neuroImaging/fsl/5.0.11 system/hwloc/2.1.0/gcc-8.3.1
genomics/ngs/bedtools2/2.29.1/gcc-8.3.1 library/cudnn/9.2/cudnn neuroImaging/fsl/5.0.9 system/knem/1.1.3/gcc-8.3.1
genomics/ngs/bwa/0.7.17/gcc-8.3.1 library/fltk/1.3.5/gcc-8.3.1 neuroImaging/fsl/6.0.0 system/python/2.7.17
genomics/ngs/samtools/1.10/gcc-8.3.1 library/ftgl/2.1.3/gcc-8.3.1 neuroImaging/fsl/6.0.1 system/python/3.7.6
genomics/ngs/shapeit4/4.1.3/gcc-8.3.1 library/gdal/2.4.4/gcc-8.3.1 neuroImaging/fsl/6.0.2 system/python/3.8.1 (D)
genomics/ngs/vcftools/0.1.16/gcc-8.3.1 library/gdal/3.0.4/gcc-8.3.1 neuroImaging/fsl/6.0.3 tools/gitlab-runner/12.8.0
gwas/depict/1.rel194 library/htslib/1.10.2/gcc-8.3.1 neuroImaging/fsl/fix/1.06.12 tools/jupyterlab/4.3.1
gwas/plink/1.07 library/java/OpenJDK-11.0.2 pharmaceutical/PsN/4.9.0 tools/miniconda/python2.7/4.7.12
gwas/plink/1.90b6.17 library/java/OpenJDK-12.0.2 pharmaceutical/nonmem/7.4.4/gcc-8.3.1 tools/miniconda/python3.7/4.7.12
gwas/plink/1.90p library/java/OpenJDK-13.0.2 (D) pharmaceutical/pirana/2.9.7 tools/websockify/0.9.0
gwas/plink/2.00a3LM (D) library/mpi/mpich/3.3.2/gcc-8.3.1 pharmaceutical/pirana/2.9.8 (D)
container/singularity/3.5.3/gcc.8.3.1 library/cuda/10.2/gcc.8.3.1 mathematical/octave/libs/SuiteSparse/5.7.2/gcc-8.3.1 pharmaceutical/pirana/2.9.7
cryogenicEM/chimera/1.14/gcc-8.3.1 library/cuda/7.5/gcc.8.3.1 mathematical/octave/libs/arpack/3.7.0/gcc-8.3.1 pharmaceutical/pirana/2.9.8 (D)
cryogenicEM/ctffind/4.1.13/gcc-8.3.1 library/cuda/8.0/gcc.8.3.1 mathematical/octave/libs/gl2ps/1.4.2/gcc-8.3.1 statistical/MATLAB/R2016b
cryogenicEM/eman2/2.31 library/cuda/9.0/gcc.8.3.1 mathematical/octave/libs/glpk/4.65/gcc-8.3.1 statistical/MATLAB/R2018b
cryogenicEM/gctf/1.06 library/cuda/9.1/gcc.8.3.1 mathematical/octave/libs/qhull/8.0.0/gcc-8.3.1 statistical/MATLAB/R2019b
cryogenicEM/imod/4.9.12 library/cuda/9.2/gcc.8.3.1 mathematical/octave/libs/qrupdate/1.1.2/gcc-8.3.1 statistical/MATLAB/v93/MCR2017b
cryogenicEM/motioncor2/1.31 library/cudnn/10.0/cudnn mathematical/octave/libs/sundials/5.3.0/gcc-8.3.1 statistical/MATLAB/v97/MCR2019b
cryogenicEM/relion/3.0.8/gcc-8.3.1 library/cudnn/10.1/cudnn medicalImaging/minc-stuffs/0.1.25/gcc-8.3.1 statistical/R/3.4.4/gcc.8.3.1
cryogenicEM/relion/3.1-beta/gcc-8.3.1 library/cudnn/10.2/cudnn medicalImaging/minc-toolkit-v2/1.9.17/gcc-8.3.1 statistical/R/3.5.3/gcc.8.3.1
cryogenicEM/resmap/1.1.4 library/cudnn/9.0/cudnn medicalImaging/minc2-simple/2.2.30/gcc-8.3.1 statistical/R/3.6.2/gcc.8.3.1
genomics/hmmer/openmpi-3.1.5/3.3/gcc-8.3.1 library/cudnn/9.2/cudnn medicalImaging/pydpiper/2.0.9 statistical/R/4.0.0/gcc.8.3.1
genomics/ngs/bcftools/1.10.2/gcc-8.3.1 library/fltk/1.3.5/gcc-8.3.1 medicalImaging/pydpiper/2.0.14 (D) statistical/RStudio/1.2.5033/gcc-8.3.1
genomics/ngs/bcl2fastq/2.20.0 library/ftgl/2.1.3/gcc-8.3.1 medicalImaging/pyminc/0.52 system/go/1.13.7
genomics/ngs/bedtools2/2.29.1/gcc-8.3.1 library/gdal/2.4.4/gcc-8.3.1 neuroImaging/Elastix/5.0.0/gcc-7.4.0 system/hwloc/1.11.13/gcc-8.3.1
genomics/ngs/bwa/0.7.17/gcc-8.3.1 library/gdal/3.0.4/gcc-8.3.1 neuroImaging/FSLeyes/0.32.3 system/hwloc/2.1.0/gcc-8.3.1
genomics/ngs/samtools/1.10/gcc-8.3.1 library/htslib/1.10.2/gcc-8.3.1 neuroImaging/SimpleElastix/0.10.0/python3.6.8 system/knem/1.1.3/gcc-8.3.1
genomics/ngs/shapeit4/4.1.3/gcc-8.3.1 library/java/OpenJDK-11.0.2 neuroImaging/freesurfer/stable-pub-v6.0.0.patched system/python/2.7.17
genomics/ngs/vcftools/0.1.16/gcc-8.3.1 library/java/OpenJDK-12.0.2 neuroImaging/freesurfer/7.1.0 (D) system/python/3.7.6
graphics/gnuplot/5.2.8/gcc-8.3.1 library/java/OpenJDK-13.0.2 (D) neuroImaging/fsl/5.0.10 system/python/3.8.1 (D)
graphics/graphicsmagick/1.3.35/gcc-8.3.1 library/lapack/3.9.0/gcc-8.3.1 neuroImaging/fsl/5.0.11 system/qt/5.14.2/gcc-8.3.1
gwas/depict/1.rel194 library/mpi/mpich/3.3.2/gcc-8.3.1 neuroImaging/fsl/5.0.9 system/swi-prolog/8.2.0
gwas/plink/1.07 library/mpi/openmpi/3.1.5/gcc-8.3.1 neuroImaging/fsl/6.0.0 tools/biomake/0.1.5
gwas/plink/1.90b6.17 library/mpi/openmpi/4.0.2/gcc-8.3.1 neuroImaging/fsl/6.0.1 tools/cmake/3.11.4
gwas/plink/1.90p library/mpi/openmpi/4.0.3/gcc-8.3.1 neuroImaging/fsl/6.0.2 tools/gitlab-runner/12.8.0
gwas/plink/2.00a3LM (D) library/pmi/openpmix/2.2.3/gcc-8.3.1 neuroImaging/fsl/6.0.3 tools/jupyterlab/4.3.1
library/blas/0.3.10/gcc-8.3.1 library/pmi/openpmix/3.1.4/gcc-8.3.1 neuroImaging/fsl/fix/1.06.12 tools/luarocks/3.3.1/gcc-8.3.1
library/boost/1.72.0/gcc-8.3.1 library/sparsehash/2.0.3/gcc-8.3.1 neuroImaging/mrtrix/3.0.0/gcc-8.3.1 tools/miniconda/python2.7/4.7.12
library/cuda/10.0/gcc.8.3.1 library/wxwidgets/3.1.3/gcc-8.3.1 pharmaceutical/PsN/4.9.0 tools/miniconda/python3.7/4.7.12
library/cuda/10.1/gcc.8.3.1 mathematical/octave/5.2.0/gcc-8.3.1 pharmaceutical/nonmem/7.4.4/gcc-8.3.1 tools/websockify/0.9.0
-------------------------------------------------------------------------------------- /usr/share/lmod/lmod/modulefiles/Core --------------------------------------------------------------------------------------
lmod settarg
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@@ -364,7 +370,6 @@ module av
Use "module spider" to find all possible modules and extensions.
Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys".
```
-
load a module
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