EnvironmentModules.md

@@ -45,4 +45,27 @@ To unload a module:
     #!sh
     $ module unload R/3.0.2
 
+## Use environment modules with qsub script
+
+If you want to use the modules command within a script that you want to submit with qsub  
+you need to source /usr/local/Modules/current/init/bash.  
+A example script that you would submit would look like this:
+```
+#!/bin/bash
+#$ -S /bin/bash
+#$ -q all.q
+#$ -N my_first_job
+#$ -l h_vmem=1G
+#$ -cwd
+#$ -j Y
+#$ -V
+#$ -m be
+#$ -M email@address.lumc
+
+. /usr/local/Modules/current/init/bash
+
+module load R/3.2.3
+
+R CMD BATCH test.R
+```