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Use SQLAlchemy as ORM

Martijn Vermaat requested to merge sqlalchemy into refactor

There are many advantages to using a proper ORM and database abstraction layer over the current Db module with MySQLdb which I won't go into at this moment.

The Db module is quite entangled with all of Mutalyzer, so this undertaking will touch a lot of code and will not be very easy. It will also give us the opportunity to do some cleanups along the way.

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