Moved extensions to new module

public/biopet-core/src/test/scala/nl/lumc/sasc/biopet/extensions/picard/MarkDuplicatesTest.scala → public/biopet-extentsions/src/test/scala/nl/lumc/sasc/biopet/extensions/picard/MarkDuplicatesTest.scala

@@ -31,7 +31,7 @@ class MarkDuplicatesTest extends TestNGSuite with Matchers {
 
   @Test
   def summaryData(): Unit = {
-    val file = new File(Paths.get(getClass.getResource("/picard.dedup.metrics").toURI).toString)
+    val file = new File(Paths.get(getClass.getResource("picard.dedup.metrics").toURI).toString)
     val job = new MarkDuplicates(null)
     job.outputMetrics = file
 

public/biopet-tools-extensions/pom.xml

@@ -15,12 +15,17 @@
         <dependency>
             <groupId>nl.lumc.sasc</groupId>
             <artifactId>BiopetCore</artifactId>
-            <version>0.5.0-SNAPSHOT</version>
+            <version>${project.version}</version>
+        </dependency>
+        <dependency>
+            <groupId>nl.lumc.sasc</groupId>
+            <artifactId>BiopetExtensions</artifactId>
+            <version>${project.version}</version>
         </dependency>
         <dependency>
             <groupId>nl.lumc.sasc</groupId>
             <artifactId>BiopetTools</artifactId>
-            <version>0.5.0-SNAPSHOT</version>
+            <version>${project.version}</version>
         </dependency>
     </dependencies>
 

public/kopisu/pom.xml

@@ -38,5 +38,10 @@
             <artifactId>BiopetCore</artifactId>
             <version>${project.version}</version>
         </dependency>
+        <dependency>
+            <groupId>nl.lumc.sasc</groupId>
+            <artifactId>BiopetExtensions</artifactId>
+            <version>${project.version}</version>
+        </dependency>
     </dependencies>
 </project>

public/pom.xml

@@ -44,6 +44,7 @@
         <module>biopet-utils</module>
         <module>biopet-tools</module>
         <module>biopet-tools-extensions</module>
+        <module>biopet-extentsions</module>
     </modules>
 
     <properties>