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  • biowdl
  • tasks
  • Merge requests
  • Open 0
  • Merged 97
  • Closed 3
  • All 100
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  • Switched executable
    !19 · created Jun 12, 2018 by Ruben Vorderman
    • MERGED
    • 0
    updated Jun 12, 2018
  • Add validatefastq
    !22 · created Jun 19, 2018 by Ruben Vorderman   develop
    • MERGED
    • 0
    updated Jun 19, 2018
  • Changes needed for the iterative assembly pipeline
    !11 · created May 07, 2018 by Ruben Vorderman
    • MERGED
    • 2
    updated May 21, 2018
  • Caching related changes
    !17 · created Jun 12, 2018 by Ruben Vorderman
    • MERGED
    • 0
    updated Jun 12, 2018
  • Changes for QC pipeline
    !18 · created Jun 12, 2018 by Ruben Vorderman
    • MERGED
    • 0
    updated Jun 12, 2018
  • Star
    !2 · created Mar 15, 2018 by Ruben Vorderman
    • MERGED
    • 0
    updated Mar 15, 2018
  • fix conda command SampleConfig
    !20 · created Jun 13, 2018 by Ruben Vorderman
    • MERGED
    • 0
    updated Jun 13, 2018
  • Changes for virus assembly pipeline
    !9 · created Apr 18, 2018 by Ruben Vorderman
    • CLOSED
    • 8
    updated May 07, 2018
  • Add memory runtime for validate fastq
    !23 · created Jun 20, 2018 by Ruben Vorderman   develop
    • MERGED
    • 0
    updated Jun 20, 2018
  • add limitBAMsortRAM to STAR and make sampleConfig write to file
    !14 · created May 14, 2018 by Ruben Vorderman
    • MERGED
    • 5
    updated Jun 01, 2018
  • Adding flash task for combining overlapping reads
    !12 · created May 08, 2018 by Ruben Vorderman
    • MERGED
    • 4
    updated May 17, 2018
  • Changes after testing
    !24 · created Jun 20, 2018 by Ruben Vorderman   develop
    • MERGED
    • 1
    updated Jun 21, 2018
  • add SplitNCigarReads
    !5 · created Mar 19, 2018 by Ruben Vorderman
    • MERGED
    • 1
    updated Mar 20, 2018
  • Extra tasks required for assembly.
    !10 · created May 07, 2018 by Ruben Vorderman
    • MERGED
    • 6
    updated May 07, 2018
  • add merge counts
    !6 · created Mar 19, 2018 by Ruben Vorderman
    • MERGED
    • 3
    updated Mar 29, 2018
  • Add quantification tools
    !4 · created Mar 16, 2018 by Ruben Vorderman
    • MERGED
    • 4
    updated Mar 29, 2018
  • Run time settings and additional adjustments
    !8 · created Apr 05, 2018 by Ruben Vorderman
    • MERGED
    • 0
    updated Apr 17, 2018
  • Centrifuge classify and kreport tasks
    !13 · created May 11, 2018 by Ruben Vorderman
    • MERGED
    • 7
    updated Jun 20, 2018
  • add intervals option to SplitNCigarReads
    !7 · created Mar 21, 2018 by Ruben Vorderman
    • MERGED
    • 0
    updated Mar 29, 2018
  • Add task for bowtie aligner
    !1 · created Mar 14, 2018 by Ruben Vorderman
    • CLOSED
    • 12
    updated Mar 14, 2018
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