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Created date
add outSAMunmapped to star
!81
· created
Dec 06, 2018
by
Ruben Vorderman
develop
Merged
updated
Feb 08, 2019
Adapt sane defaults for human analysis.
!82
· created
Dec 06, 2018
by
Ruben Vorderman
develop
Merged
updated
Dec 07, 2018
add stringtie merge
!83
· created
Dec 12, 2018
by
Ruben Vorderman
develop
Merged
updated
Dec 12, 2018
Allow stringtie to skip novel transcripts
!84
· created
Dec 13, 2018
by
Ruben Vorderman
develop
Merged
updated
Dec 13, 2018
Make tasks suitable for running against relative paths.
!85
· created
Jan 08, 2019
by
Ruben Vorderman
develop
Merged
updated
Jan 08, 2019
Add docker for samtools and STAR
!86
· created
Feb 01, 2019
by
Ruben Vorderman
develop
Merged
updated
Feb 01, 2019
Saner input for cutadapt
!87
· created
Feb 01, 2019
by
Ruben Vorderman
develop
Merged
updated
Feb 04, 2019
add docker for extract adapters, catadapt and fastqc
!88
· created
Feb 08, 2019
by
Ruben Vorderman
develop
Merged
updated
Feb 11, 2019
allow for additional annotations to be added into mergecounts output
!89
· created
Feb 14, 2019
by
Ruben Vorderman
develop
Merged
1
updated
Feb 25, 2019
Move all picard tasks to containers.
!90
· created
Feb 19, 2019
by
Ruben Vorderman
develop
Merged
updated
Feb 19, 2019
add hisat2 task
!91
· created
Feb 20, 2019
by
Ruben Vorderman
develop
Merged
updated
Feb 20, 2019
Dockerize GATK. Scattering now works with containers. Tabix another docker image.
!92
· created
Feb 20, 2019
by
Ruben Vorderman
develop
Merged
9
updated
Feb 21, 2019
Containerize gffread and cpat
!94
· created
Feb 22, 2019
by
Ruben Vorderman
develop
Merged
2
updated
Feb 25, 2019
some clean up
!95
· created
Feb 22, 2019
by
Ruben Vorderman
develop
Merged
1
updated
Feb 25, 2019
Work with python slim containers to perform python script tasks.
!96
· created
Feb 25, 2019
by
Ruben Vorderman
develop
Merged
updated
Feb 25, 2019
Containerize tasks for RNA-seq
!97
· created
Feb 25, 2019
by
Ruben Vorderman
develop
Merged
2
updated
Feb 26, 2019
docker added for somatic variantcallers
!98
· created
Mar 05, 2019
by
Ruben Vorderman
develop
Merged
updated
Mar 05, 2019
Add copy
!99
· created
Mar 12, 2019
by
Ruben Vorderman
develop
Merged
updated
Mar 13, 2019
add bamFile input to scatterregions
!100
· created
Mar 18, 2019
by
Ruben Vorderman
develop
Merged
updated
Mar 19, 2019
Set additional cpus for vardict
!101
· created
Mar 21, 2019
by
Ruben Vorderman
develop
Merged
updated
Mar 25, 2019
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