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Title
Added seqstat, set minlength for cutadapt to 1.
!21
· created
Jun 14, 2018
by
Ruben Vorderman
develop
Merged
5
updated
Jun 19, 2018
Added struct
!65
· created
Oct 08, 2018
by
Ruben Vorderman
develop
Merged
0
updated
Oct 09, 2018
Adding flash task for combining overlapping reads
!12
· created
May 08, 2018
by
Ruben Vorderman
Merged
4
updated
May 17, 2018
allow for additional annotations to be added into mergecounts output
!89
· created
Feb 14, 2019
by
Ruben Vorderman
develop
Merged
1
updated
Feb 25, 2019
Allow stringtie to skip novel transcripts
!84
· created
Dec 13, 2018
by
Ruben Vorderman
develop
Merged
0
updated
Dec 13, 2018
Biowdl 25
!15
· created
May 29, 2018
by
Ruben Vorderman
Merged
10
updated
May 30, 2018
Caching related changes
!17
· created
Jun 12, 2018
by
Ruben Vorderman
Merged
0
updated
Jun 12, 2018
Centrifuge classify and kreport tasks
!13
· created
May 11, 2018
by
Ruben Vorderman
Merged
7
updated
Jun 20, 2018
Centrifuge related changes
!16
· created
Jun 05, 2018
by
Ruben Vorderman
Merged
0
updated
Jun 12, 2018
Changes after testing
!24
· created
Jun 20, 2018
by
Ruben Vorderman
develop
Merged
1
updated
Jun 21, 2018
Changes for QC pipeline
!18
· created
Jun 12, 2018
by
Ruben Vorderman
Merged
0
updated
Jun 12, 2018
Changes for somatic variantcalling
!45
· created
Aug 16, 2018
by
Ruben Vorderman
develop
Merged
0
updated
Aug 16, 2018
Changes for virus assembly pipeline
!9
· created
Apr 18, 2018
by
Ruben Vorderman
Closed
8
updated
May 07, 2018
Changes needed for the iterative assembly pipeline
!11
· created
May 07, 2018
by
Ruben Vorderman
Merged
2
updated
May 21, 2018
Containerize gffread and cpat
!94
· created
Feb 22, 2019
by
Ruben Vorderman
develop
Merged
2
updated
Feb 25, 2019
Containerize tasks for RNA-seq
!97
· created
Feb 25, 2019
by
Ruben Vorderman
develop
Merged
2
updated
Feb 26, 2019
docker added for somatic variantcallers
!98
· created
Mar 05, 2019
by
Ruben Vorderman
develop
Merged
0
updated
Mar 05, 2019
Dockerize GATK. Scattering now works with containers. Tabix another docker image.
!92
· created
Feb 20, 2019
by
Ruben Vorderman
develop
Merged
9
updated
Feb 21, 2019
Extra tasks required for assembly.
!10
· created
May 07, 2018
by
Ruben Vorderman
Merged
6
updated
May 07, 2018
fix CaseControl and macs2 tasks
!67
· created
Oct 09, 2018
by
Ruben Vorderman
develop
Merged
0
updated
Oct 16, 2018
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