Merge requests · biowdl / tasks

Adding flash task for combining overlapping reads

!12 · created May 08, 2018 by Ruben Vorderman
- MERGED
- 4
updated May 17, 2018
Changes needed for the iterative assembly pipeline

!11 · created May 07, 2018 by Ruben Vorderman
- MERGED
- 2
updated May 21, 2018
add picard metrics tools

!30 · created Jul 17, 2018 by Ruben Vorderman develop
- MERGED
- 0
updated Jul 19, 2018
fix outputs for metrics picard metrics

!46 · created Aug 17, 2018 by Ruben Vorderman develop
- MERGED
- 0
updated Aug 17, 2018
Biowdl 25

!15 · created May 29, 2018 by Ruben Vorderman
- MERGED
- 10
updated May 30, 2018
Added mkdir step

!25 · created Jun 28, 2018 by Ruben Vorderman develop
- MERGED
- 0
updated Jun 28, 2018
Add copy

!99 · created Mar 12, 2019 by Ruben Vorderman develop
- MERGED
- 0
updated Mar 13, 2019
Add docker for samtools and STAR

!86 · created Feb 01, 2019 by Ruben Vorderman develop
- MERGED
- 0
updated Feb 01, 2019
docker added for somatic variantcallers

!98 · created Mar 05, 2019 by Ruben Vorderman develop
- MERGED
- 0
updated Mar 05, 2019
Containerize gffread and cpat

!94 · created Feb 22, 2019 by Ruben Vorderman develop
- MERGED
- 2
updated Feb 25, 2019
some clean up

!95 · created Feb 22, 2019 by Ruben Vorderman develop
- MERGED
- 1
updated Feb 25, 2019
Work with python slim containers to perform python script tasks.

!96 · created Feb 25, 2019 by Ruben Vorderman develop
- MERGED
- 0
updated Feb 25, 2019
Saner input for cutadapt

!87 · created Feb 01, 2019 by Ruben Vorderman develop
- MERGED
- 0
updated Feb 04, 2019
add hisat2 task

!91 · created Feb 20, 2019 by Ruben Vorderman develop
- MERGED
- 0
updated Feb 20, 2019
Set additional cpus for vardict

!101 · created Mar 21, 2019 by Ruben Vorderman develop
- MERGED
- 0
updated Mar 25, 2019
add docker for extract adapters, catadapt and fastqc

!88 · created Feb 08, 2019 by Ruben Vorderman develop
- MERGED
- 0
updated Feb 11, 2019
Containerize tasks for RNA-seq

!97 · created Feb 25, 2019 by Ruben Vorderman develop
- MERGED
- 2
updated Feb 26, 2019
add bamFile input to scatterregions

!100 · created Mar 18, 2019 by Ruben Vorderman develop
- MERGED
- 0
updated Mar 19, 2019
Star

!2 · created Mar 15, 2018 by Ruben Vorderman
- MERGED
- 0
updated Mar 15, 2018
Added more structs

!52 · created Aug 22, 2018 by Ruben Vorderman develop
- MERGED
- 0
updated Aug 22, 2018