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  • biowdl
  • tasks
  • Merge requests
  • Open 0
  • Merged 97
  • Closed 3
  • All 100
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  • Adding flash task for combining overlapping reads
    !12 · created May 08, 2018 by Ruben Vorderman
    • MERGED
    • 4
    updated May 17, 2018
  • Changes needed for the iterative assembly pipeline
    !11 · created May 07, 2018 by Ruben Vorderman
    • MERGED
    • 2
    updated May 21, 2018
  • add picard metrics tools
    !30 · created Jul 17, 2018 by Ruben Vorderman   develop
    • MERGED
    • 0
    updated Jul 19, 2018
  • fix outputs for metrics picard metrics
    !46 · created Aug 17, 2018 by Ruben Vorderman   develop
    • MERGED
    • 0
    updated Aug 17, 2018
  • Biowdl 25
    !15 · created May 29, 2018 by Ruben Vorderman
    • MERGED
    • 10
    updated May 30, 2018
  • Added mkdir step
    !25 · created Jun 28, 2018 by Ruben Vorderman   develop
    • MERGED
    • 0
    updated Jun 28, 2018
  • Add copy
    !99 · created Mar 12, 2019 by Ruben Vorderman   develop
    • MERGED
    • 0
    updated Mar 13, 2019
  • Add docker for samtools and STAR
    !86 · created Feb 01, 2019 by Ruben Vorderman   develop
    • MERGED
    • 0
    updated Feb 01, 2019
  • docker added for somatic variantcallers
    !98 · created Mar 05, 2019 by Ruben Vorderman   develop
    • MERGED
    • 0
    updated Mar 05, 2019
  • Containerize gffread and cpat
    !94 · created Feb 22, 2019 by Ruben Vorderman   develop
    • MERGED
    • 2
    updated Feb 25, 2019
  • some clean up
    !95 · created Feb 22, 2019 by Ruben Vorderman   develop
    • MERGED
    • 1
    updated Feb 25, 2019
  • Work with python slim containers to perform python script tasks.
    !96 · created Feb 25, 2019 by Ruben Vorderman   develop
    • MERGED
    • 0
    updated Feb 25, 2019
  • Saner input for cutadapt
    !87 · created Feb 01, 2019 by Ruben Vorderman   develop
    • MERGED
    • 0
    updated Feb 04, 2019
  • add hisat2 task
    !91 · created Feb 20, 2019 by Ruben Vorderman   develop
    • MERGED
    • 0
    updated Feb 20, 2019
  • Set additional cpus for vardict
    !101 · created Mar 21, 2019 by Ruben Vorderman   develop
    • MERGED
    • 0
    updated Mar 25, 2019
  • add docker for extract adapters, catadapt and fastqc
    !88 · created Feb 08, 2019 by Ruben Vorderman   develop
    • MERGED
    • 0
    updated Feb 11, 2019
  • Containerize tasks for RNA-seq
    !97 · created Feb 25, 2019 by Ruben Vorderman   develop
    • MERGED
    • 2
    updated Feb 26, 2019
  • add bamFile input to scatterregions
    !100 · created Mar 18, 2019 by Ruben Vorderman   develop
    • MERGED
    • 0
    updated Mar 19, 2019
  • Star
    !2 · created Mar 15, 2018 by Ruben Vorderman
    • MERGED
    • 0
    updated Mar 15, 2018
  • Added more structs
    !52 · created Aug 22, 2018 by Ruben Vorderman   develop
    • MERGED
    • 0
    updated Aug 22, 2018
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