Merge requests · biowdl / tasks

Add missing rquired inputs

!35 · created Jul 23, 2018 by Ruben Vorderman develop
- Merged
updated Jul 24, 2018
fix missing space after toolcommand

!33 · created Jul 23, 2018 by Ruben Vorderman develop
- Merged
updated Jul 23, 2018
style changes and adds task to check file md5

!32 · created Jul 19, 2018 by Ruben Vorderman develop
- Merged
updated Jul 26, 2018
add validatevcf and validateannotation

!31 · created Jul 18, 2018 by Ruben Vorderman develop
- Merged
updated Jul 19, 2018
modify definition of defaults in star.wdl

!3 · created Mar 15, 2018 by Ruben Vorderman
- Merged
updated Mar 16, 2018
Macs2

!29 · created Jul 16, 2018 by Ruben Vorderman develop
- Merged
updated Jul 16, 2018
Added precommand to ExtractAdaptersFastqc task

!28 · created Jul 11, 2018 by Ruben Vorderman develop
- Merged
updated Jul 11, 2018
Fix typo in command

!27 · created Jul 03, 2018 by Ruben Vorderman develop
- Merged
updated Jul 03, 2018
Macs2

!26 · created Jul 02, 2018 by Ruben Vorderman develop
- Merged
- 2
updated Jul 02, 2018
Changes after testing

!24 · created Jun 20, 2018 by Ruben Vorderman develop
- Merged
- 1
updated Jun 21, 2018
Add memory runtime for validate fastq

!23 · created Jun 20, 2018 by Ruben Vorderman develop
- Merged
updated Jun 20, 2018
Add validatefastq

!22 · created Jun 19, 2018 by Ruben Vorderman develop
- Merged
updated Jun 19, 2018
Added seqstat, set minlength for cutadapt to 1.

!21 · created Jun 14, 2018 by Ruben Vorderman develop
- Merged
- 5
updated Jun 19, 2018
fix conda command SampleConfig

!20 · created Jun 13, 2018 by Ruben Vorderman
- Merged
updated Jun 13, 2018
Switched executable

!19 · created Jun 12, 2018 by Ruben Vorderman
- Merged
updated Jun 12, 2018
Changes for QC pipeline

!18 · created Jun 12, 2018 by Ruben Vorderman
- Merged
updated Jun 12, 2018
Caching related changes

!17 · created Jun 12, 2018 by Ruben Vorderman
- Merged
updated Jun 12, 2018
Centrifuge related changes

!16 · created Jun 05, 2018 by Ruben Vorderman
- Merged
updated Jun 12, 2018
add limitBAMsortRAM to STAR and make sampleConfig write to file

!14 · created May 14, 2018 by Ruben Vorderman
- Merged
- 5
updated Jun 01, 2018
Centrifuge classify and kreport tasks

!13 · created May 11, 2018 by Ruben Vorderman
- Merged
- 7
updated Jun 20, 2018