Dockerize GATK. Scattering now works with containers. Tabix another docker image. (!92) · Merge requests · biowdl / tasks

Merged Ruben Vorderman requested to merge BIOWDL-199 into develop 6 years ago

Feb 21, 2019
- Merge branch 'BIOWDL-199' of https://github.com/biowdl/tasks into BIOWDL-199 · 68ff64af
  Ruben Vorderman authored 6 years ago
  
  68ff64af
- explain the why · b742bffc
  Ruben Vorderman authored 6 years ago
  
  b742bffc
- increase memory · 18eb28a7
  Ruben Vorderman authored 6 years ago
  
  18eb28a7
- excessive newline removal · 732552c4
  Ruben Vorderman authored 6 years ago
  
  732552c4
- make outdirpath available · 8d8f5339
  Ruben Vorderman authored 6 years ago
  
  8d8f5339
- memory updated · 99cb0cec
  Ruben Vorderman authored 6 years ago
  
  99cb0cec
Feb 20, 2019
- make output dirs · 5607a41d
  Ruben Vorderman authored 6 years ago
  
  5607a41d
- correctly use gatk4 · c91340d5
  Ruben Vorderman authored 6 years ago
  
  c91340d5
- tabix container for bgzip · 810228f4
  Ruben Vorderman authored 6 years ago
  
  810228f4
- Merge branch 'develop' into BIOWDL-199 · 82cc7609
  Ruben Vorderman authored 6 years ago
  
  Unverified
  
  82cc7609
- remove redundant precommand stuff · 6be49bda
  Ruben Vorderman authored 6 years ago
  
  6be49bda
- tabix uses its own container · d6beeeba
  Ruben Vorderman authored 6 years ago
  
  d6beeeba
- create the output dir · 3447c885
  Ruben Vorderman authored 6 years ago
  
  3447c885
- make sure scatters work correctly · 10d09e2a
  Ruben Vorderman authored 6 years ago
  
  10d09e2a
- fix gatk images · 8479f908
  Ruben Vorderman authored 6 years ago
  
  8479f908
- fix a few things in biopet · 14eae8b4
  Ruben Vorderman authored 6 years ago
  
  14eae8b4
- fix order · 64bbcb2c
  Ruben Vorderman authored 6 years ago
  
  64bbcb2c
- scatterdir is a file · 18e19a08
  Ruben Vorderman authored 6 years ago
  
  18e19a08
- make scatterregions work in container · b7cc4761
  Ruben Vorderman authored 6 years ago
  
  b7cc4761
Feb 19, 2019
- correct name · 99767ad1
  Ruben Vorderman authored 6 years ago
  
  99767ad1
- add tags to all samtools stuff · 0e84089e
  Ruben Vorderman authored 6 years ago
  
  0e84089e
- dockerize scatterregions · c8af9b5d
  Ruben Vorderman authored 6 years ago
  
  c8af9b5d
- run python script in container · 31551e41
  Ruben Vorderman authored 6 years ago
  
  31551e41
- add docker containers to gatk · eec5791c
  Ruben Vorderman authored 6 years ago
  
  eec5791c

Dockerize GATK. Scattering now works with containers. Tabix another docker image.

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