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Sam Nooij
Jovian screener
Commits
fe1c5bf7
Commit
fe1c5bf7
authored
Aug 06, 2020
by
Sam Nooij
Browse files
Add minimum-lengths file to output filter_blast_hits
parent
8ba28d0d
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fe1c5bf7
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@@ -334,7 +334,8 @@ rule filter_blast_hits:
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@@ -334,7 +334,8 @@ rule filter_blast_hits:
blast="data/tmp/{sample}_{ref}.blast",
blast="data/tmp/{sample}_{ref}.blast",
lengths=REFERENCE_DIR + "{ref}_lengths.tsv",
lengths=REFERENCE_DIR + "{ref}_lengths.tsv",
output:
output:
"data/tmp/{sample}_{ref}-filtered.blast"
filtered_blast="data/tmp/{sample}_{ref}-filtered.blast",
minimum_lengths="REFERENCE_DIR + "{ref}_minimum-lengths.tsv",
conda:
conda:
"envs/pandas.yaml"
"envs/pandas.yaml"
threads: 1
threads: 1
...
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