Commit 8ba28d0d authored by Sam Nooij's avatar Sam Nooij
Browse files

Make unpaired bam files temporary too

parent 8e0c8029
......@@ -448,7 +448,7 @@ rule map_unpaired_trimmed_reads:
amb=REFERENCE_DIR + "{ref}.fasta.amb",
sa=REFERENCE_DIR + "{ref}.fasta.sa",
output:
bam="data/tmp/Mapped_{sample}_to_{ref}-unpaired.bam",
bam=temp("data/tmp/Mapped_{sample}_to_{ref}-unpaired.bam"),
conda:
"envs/bwa-samtools.yaml"
threads:
......
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