Commit 6ce6ee4e authored by Sam Nooij's avatar Sam Nooij
Browse files

Save disk space: make bam files temporary

parent 0b4e690c
......@@ -404,7 +404,7 @@ rule map_paired_trimmed_reads:
amb=REFERENCE_DIR + "{ref}.fasta.amb",
sa=REFERENCE_DIR + "{ref}.fasta.sa",
output:
bam="data/tmp/Mapped_{sample}_to_{ref}-paired.bam",
bam=temp("data/tmp/Mapped_{sample}_to_{ref}-paired.bam"),
conda:
"envs/bwa-samtools.yaml"
threads:
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment