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...@@ -320,28 +320,32 @@ Here below are some useful commands and examples: ...@@ -320,28 +320,32 @@ Here below are some useful commands and examples:
- List all available modules - List all available modules
``` ```
module avail module av
----------------------------------------------------------------------------------------------- /share/modulefiles ------------------------------------------------------------------------------------------------ ----------------------------------------------------------------------------------------------- /share/modulefiles ------------------------------------------------------------------------------------------------
container/singularity/3.5.3/gcc.8.3.1 library/cuda/9.1/gcc.8.3.1 library/wxwidgets/3.1.3/gcc-8.3.1 statistical/MATLAB/v97/MCR2019b container/singularity/3.5.3/gcc.8.3.1 library/boost/1.72.0/gcc-8.3.1 library/mpi/openmpi/3.1.5/gcc-8.3.1 statistical/MATLAB/R2016b
cryogenicEM/chimera/1.14/gcc-8.3.1 library/cuda/9.2/gcc.8.3.1 neuroImaging/Elastix/5.0.0/gcc-7.4.0 statistical/R/3.6.2/gcc.8.3.1 cryogenicEM/chimera/1.14/gcc-8.3.1 library/cuda/10.0/gcc.8.3.1 library/mpi/openmpi/4.0.2/gcc-8.3.1 statistical/MATLAB/R2018b
cryogenicEM/ctffind/4.1.13/gcc-8.3.1 library/cudnn/10.0/cudnn neuroImaging/FSLeyes/0.32.0 system/go/1.13.7 cryogenicEM/ctffind/4.1.13/gcc-8.3.1 library/cuda/10.1/gcc.8.3.1 library/mpi/openmpi/4.0.3/gcc-8.3.1 statistical/MATLAB/R2019b
cryogenicEM/eman2/2.31 library/cudnn/10.1/cudnn neuroImaging/SimpleElastix/0.10.0/python3.6.8 system/hwloc/1.11.13/gcc-8.3.1 cryogenicEM/eman2/2.31 library/cuda/10.2/gcc.8.3.1 library/pmi/openpmix/2.2.3/gcc-8.3.1 statistical/MATLAB/v93/MCR2017b
cryogenicEM/gctf/1.06 library/cudnn/10.2/cudnn neuroImaging/freesurfer/stable-pub-v6.0.0.patched system/hwloc/2.1.0/gcc-8.3.1 cryogenicEM/gctf/1.06 library/cuda/7.5/gcc.8.3.1 library/pmi/openpmix/3.1.4/gcc-8.3.1 statistical/MATLAB/v97/MCR2019b
cryogenicEM/imod/4.9.12 library/cudnn/9.0/cudnn neuroImaging/fsl/5.0.10 system/knem/1.1.3/gcc-8.3.1 cryogenicEM/imod/4.9.12 library/cuda/8.0/gcc.8.3.1 library/sparsehash/2.0.3/gcc-8.3.1 statistical/R/3.4.4/gcc.8.3.1
cryogenicEM/motioncor2/1.31 library/cudnn/9.2/cudnn neuroImaging/fsl/5.0.11 system/python/2.7.17 cryogenicEM/motioncor2/1.31 library/cuda/9.0/gcc.8.3.1 library/wxwidgets/3.1.3/gcc-8.3.1 statistical/R/3.5.3/gcc.8.3.1
cryogenicEM/resmap/1.1.4 library/ftgl/2.1.3/gcc-8.3.1 neuroImaging/fsl/5.0.9 system/python/3.7.6 cryogenicEM/relion/3.0.8/gcc-8.3.1 library/cuda/9.1/gcc.8.3.1 neuroImaging/Elastix/5.0.0/gcc-7.4.0 statistical/R/3.6.2/gcc.8.3.1
gwas/depict/1.rel194 library/gdal/2.4.4/gcc-8.3.1 neuroImaging/fsl/6.0.0 system/python/3.8.1 (D) cryogenicEM/relion/3.1-beta/gcc-8.3.1 library/cuda/9.2/gcc.8.3.1 neuroImaging/FSLeyes/0.32.3 statistical/R/4.0.0/gcc.8.3.1
gwas/plink/1.90b6.16 library/gdal/3.0.4/gcc-8.3.1 neuroImaging/fsl/6.0.1 tools/bcftools/1.10.2/gcc-8.3.1 cryogenicEM/resmap/1.1.4 library/cudnn/10.0/cudnn neuroImaging/SimpleElastix/0.10.0/python3.6.8 statistical/RStudio/1.2.5033/gcc-8.3.1
gwas/plink/1.90p library/htslib/1.10.2/gcc-8.3.1 neuroImaging/fsl/6.0.2 tools/bedtools2/2.29.1/gcc-8.3.1 genomics/hmmer/openmpi-3.1.5/3.3/gcc-8.3.1 library/cudnn/10.1/cudnn neuroImaging/freesurfer/stable-pub-v6.0.0.patched system/go/1.13.7
gwas/plink/2.00a3LM (D) library/java/OpenJDK-11.0.2 neuroImaging/fsl/6.0.3 tools/bwa/0.7.17/gcc-8.3.1 genomics/ngs/bcftools/1.10.2/gcc-8.3.1 library/cudnn/10.2/cudnn neuroImaging/fsl/5.0.10 system/hwloc/1.11.13/gcc-8.3.1
library/boost/1.72.0/gcc-8.3.1 library/java/OpenJDK-12.0.2 neuroImaging/fsl/fix/1.06.12 tools/gitlab-runner/12.8.0 genomics/ngs/bcl2fastq/2.20.0 library/cudnn/9.0/cudnn neuroImaging/fsl/5.0.11 system/hwloc/2.1.0/gcc-8.3.1
library/cuda/10.0/gcc.8.3.1 library/java/OpenJDK-13.0.2 (D) pharmaceutical/nonmem/7.4.4/gcc-8.3.1 tools/miniconda/python2.7/4.7.12 genomics/ngs/bedtools2/2.29.1/gcc-8.3.1 library/cudnn/9.2/cudnn neuroImaging/fsl/5.0.9 system/knem/1.1.3/gcc-8.3.1
library/cuda/10.1/gcc.8.3.1 library/mpi/mpich/3.3.2/gcc-8.3.1 pharmaceutical/pirana/2.9.7 tools/miniconda/python3.7/4.7.12 genomics/ngs/bwa/0.7.17/gcc-8.3.1 library/fltk/1.3.5/gcc-8.3.1 neuroImaging/fsl/6.0.0 system/python/2.7.17
library/cuda/10.2/gcc.8.3.1 library/mpi/openmpi/3.1.5/gcc-8.3.1 pharmaceutical/pirana/2.9.8 (D) tools/samtools/1.10/gcc-8.3.1 genomics/ngs/samtools/1.10/gcc-8.3.1 library/ftgl/2.1.3/gcc-8.3.1 neuroImaging/fsl/6.0.1 system/python/3.7.6
library/cuda/7.5/gcc.8.3.1 library/mpi/openmpi/4.0.2/gcc-8.3.1 statistical/MATLAB/R2018b genomics/ngs/shapeit4/4.1.3/gcc-8.3.1 library/gdal/2.4.4/gcc-8.3.1 neuroImaging/fsl/6.0.2 system/python/3.8.1 (D)
library/cuda/8.0/gcc.8.3.1 library/pmi/openpmix/2.2.3/gcc-8.3.1 statistical/MATLAB/R2019b genomics/ngs/vcftools/0.1.16/gcc-8.3.1 library/gdal/3.0.4/gcc-8.3.1 neuroImaging/fsl/6.0.3 tools/gitlab-runner/12.8.0
library/cuda/9.0/gcc.8.3.1 library/pmi/openpmix/3.1.4/gcc-8.3.1 statistical/MATLAB/v93/MCR2017b gwas/depict/1.rel194 library/htslib/1.10.2/gcc-8.3.1 neuroImaging/fsl/fix/1.06.12 tools/jupyterlab/4.3.1
gwas/plink/1.07 library/java/OpenJDK-11.0.2 pharmaceutical/PsN/4.9.0 tools/miniconda/python2.7/4.7.12
gwas/plink/1.90b6.17 library/java/OpenJDK-12.0.2 pharmaceutical/nonmem/7.4.4/gcc-8.3.1 tools/miniconda/python3.7/4.7.12
gwas/plink/1.90p library/java/OpenJDK-13.0.2 (D) pharmaceutical/pirana/2.9.7 tools/websockify/0.9.0
gwas/plink/2.00a3LM (D) library/mpi/mpich/3.3.2/gcc-8.3.1 pharmaceutical/pirana/2.9.8 (D)
-------------------------------------------------------------------------------------- /usr/share/lmod/lmod/modulefiles/Core -------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------- /usr/share/lmod/lmod/modulefiles/Core --------------------------------------------------------------------------------------
lmod settarg lmod settarg
...@@ -351,6 +355,7 @@ module avail ...@@ -351,6 +355,7 @@ module avail
Use "module spider" to find all possible modules and extensions. Use "module spider" to find all possible modules and extensions.
Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys". Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys".
``` ```
- load a module - load a module
......