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May 20, 2020
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van Vliet
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@@ -1483,13 +1483,16 @@ You can load R with one of the modules:
*
statistical/RStudio/1.2.5033/gcc-8.3.1
Unfornately, "R" is not very efficient when running on a HPC cluster. Basically every R instance is running on only 1 core.
To make you R program to run parallel and more efficient, we have installed for now the following libraries:
To make you
r
R program to run parallel and more efficient, we have installed for now the following libraries:
*
Rmpi
*
snow
*
snowfall
*
parallel
Loading one of these libraires does
**not**
make your program to run parallel.
For that, you have to adapt your R program.
### FSLeyes
[
See:Programs that can run with "vglrun"
](
https://git.lumc.nl/shark/shark-centos-slurm-user-guide/-/wikis/home#programs-that-can-run-with-vglrun
)
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