| ... | @@ -305,4 +305,71 @@ Hello world, from process 15 of 16 on res-hpc-lo01.researchlumc.nl |
... | @@ -305,4 +305,71 @@ Hello world, from process 15 of 16 on res-hpc-lo01.researchlumc.nl |
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## Submitting jobs
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## Submitting jobs
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```
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git clone https://github.com/intel/mpi-benchmarks
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cd mpi-benchmarks
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make clean
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cd src_c
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make clean
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make -f Makefile TARGET=MPI1
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```
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```
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ldd ./IMB-MPI1
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linux-vdso.so.1 (0x00007ffc29792000)
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libmpi.so.40 => /share/software/MPI/openmpi/4.0.2/gcc-8.2.1/lib/libmpi.so.40 (0x00007f626cab1000)
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libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f626c891000)
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libc.so.6 => /lib64/libc.so.6 (0x00007f626c4cd000)
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libopen-rte.so.40 => /share/software/MPI/openmpi/4.0.2/gcc-8.2.1/lib/libopen-rte.so.40 (0x00007f626c217000)
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libopen-pal.so.40 => /share/software/MPI/openmpi/4.0.2/gcc-8.2.1/lib/libopen-pal.so.40 (0x00007f626bf6b000)
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libdl.so.2 => /lib64/libdl.so.2 (0x00007f626bd67000)
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librt.so.1 => /lib64/librt.so.1 (0x00007f626bb5e000)
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libutil.so.1 => /lib64/libutil.so.1 (0x00007f626b95a000)
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libz.so.1 => /lib64/libz.so.1 (0x00007f626b743000)
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libhwloc.so.5 => /share/software/system/hwloc/1.11.13/gcc-8.2.1/lib/libhwloc.so.5 (0x00007f626b504000)
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libm.so.6 => /lib64/libm.so.6 (0x00007f626b182000)
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libnuma.so.1 => /lib64/libnuma.so.1 (0x00007f626af76000)
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libudev.so.1 => /lib64/libudev.so.1 (0x00007f626ad50000)
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libxml2.so.2 => /lib64/libxml2.so.2 (0x00007f626a9e8000)
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libevent-2.1.so.6 => /lib64/libevent-2.1.so.6 (0x00007f626a78f000)
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libevent_pthreads-2.1.so.6 => /lib64/libevent_pthreads-2.1.so.6 (0x00007f626a58c000)
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/lib64/ld-linux-x86-64.so.2 (0x00007f626cdd4000)
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libmount.so.1 => /lib64/libmount.so.1 (0x00007f626a333000)
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libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f626a11b000)
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liblzma.so.5 => /lib64/liblzma.so.5 (0x00007f6269ef4000)
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libcrypto.so.1.1 => /lib64/libcrypto.so.1.1 (0x00007f6269a1c000)
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libblkid.so.1 => /lib64/libblkid.so.1 (0x00007f62697ca000)
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libuuid.so.1 => /lib64/libuuid.so.1 (0x00007f62695c2000)
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libselinux.so.1 => /lib64/libselinux.so.1 (0x00007f6269398000)
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libpcre2-8.so.0 => /lib64/libpcre2-8.so.0 (0x00007f6269114000)
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```
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```
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#!/bin/bash
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## wget https://github.com/intel/mpi-benchmarks/archive/v2018.1.tar.gz
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## https://hpc.oit.uci.edu/software
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#SBATCH -J IMB
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#SBATCH -N 2
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#SBATCH --ntasks-per-node=16
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#SBATCH --time=00:30:00
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#SBATCH --error=job.%J.err
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#SBATCH --output=job.%J.out
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# Clear the environment from any previously loaded modules
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module purge > /dev/null 2>&1
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# Load the module environment suitable for the job
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module load mpi/openmpi/3.1.5/gcc-8.2.1
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echo "Starting at `date`"
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echo "Running on hosts: $SLURM_NODELIST"
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echo "Running on $SLURM_NNODES nodes."
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echo "Running $SLURM_NTASKS tasks."
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echo "Current working directory is `pwd`"
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##mpirun ./IMB-MPI1 SendRecv
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##mpirun ./IMB-MPI1 PingPong
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mpirun ./IMB-MPI1
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echo "Program finished with exit code $? at: `date`"
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```
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## More Slurm info |
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## More Slurm info |
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\ No newline at end of file |
