Network Shares
Important information regarding backup
There are no backups made on all the NFS shares!!
It is your own responsibility to have a backup for the data you use on the HPC isilon storage connected to Shark.
NFS exports from HPC Isilon storage only for the Shark cluster
| NFS export | Mount point | Quota |
|---|---|---|
| resource.isilon.lumcnet.prod.intern:/ifs/exports/home | /home | 1T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/system | /share/isilon/system | 3T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/UCSC-bam | /bam-export | 1T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV4/hem-cellgenomics | /data/DIV4/hem-cellgenomics | 1T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/REUM | /data/DIV2/REUM | 6T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV4/hem-leukemia | /data/DIV4/hem-leukemia | 16T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/HumGen | /data/DIV5/HumGen | 37T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/LGTC/equipment | /data/lgtc/equipment | 66T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV3/ngs-sarcoma | /data/DIV3/ngs-sarcoma | 1T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/radiologie-hpc | /data/DIV2/radiologie-hpc | 3T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV4/ihb-diabetes | /data/DIV4/ihb-diabetes | 5T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV3/path_colonmor | /data/DIV3/path_colonmor | 2T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/LGTC | /data/LGTC | 105T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/KG | /data/DIV5/KG | 35T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/MolEpi | /data/MolEpi | 140T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/BMS | /data/DIV5/BMS | 15T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/GoNL | /data/DIV5/GoNL | 64T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV4/mmb | /data/DIV4/mmb | 2T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/endo-chipseq | /data/DIV2/endo-chipseq | 1T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/Generade | /data/Generade | 1T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/LKEB/libc-psychiatrie | /data/DIV2/LKEB/libc-psychiatrie | 2T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/LKEB/libc | /data/DIV2/LKEB/libc | 8T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/LGTC/projects | /data/lgtc/projects | 39T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/SASC | /data/DIV5/SASC | 50T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV4/mm-expmic | /data/DIV4/mm-expmic | 1T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/Education | /data/Education | 500G |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV3/huid-derl | /data/DIV3/huid-derl | 1T |
| resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/card-prosper-exome | /data/DIV2/card-prosper-exome | 50G |
NFS exports from Long Term Storage only for the Shark cluster
| NFS export | Mount point | Quota |
|---|---|---|
| tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-devilee | /LTstorage/HumGen/hg-groep-devilee | |
| tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-willemsvandijk | /LTstorage/HumGen/hg-groep-willemsvandijk | |
| tesla-fs.lumcnet.prod.intern:/shark-lts/hem-research-archief | /LTstorage/DIV4/hem-research-archief | |
| tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-peters | /LTstorage/HumGen/hg-groep-peters | |
| tesla-fs.lumcnet.prod.intern:/shark-lts/hg-sk-microbiota | /LTstorage/HumGen/hg-sk-microbiota | |
| tesla-fs.lumcnet.prod.intern:/shark-lts/fldo-storage | /LTstorage/HumGen/fldo-storage | |
| tesla-fs.lumcnet.prod.intern:/shark-lts/dermatlab-data | /LTstorage/DIV3/dermatlab-data | |
| tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-vandermaarel | /LTstorage/HumGen/hg-groep-vandermaarel | |
| tesla-fs.lumcnet.prod.intern:/shark-lts/reum-lts | /LTstorage/DIV2/REUM | |
| tesla-fs.lumcnet.prod.intern:/shark-lts/ana-cm-data | /LTstorage/DIV4/ANA/cm-data | |
| tesla-fs.lumcnet.prod.intern:/shark-lts/kg-ngs-diagnostiek | /LTstorage/KG/ngs-diagnostiek | |
| tesla-fs.lumcnet.prod.intern:/shark-lts/hg-muscle-aging | /LTstorage/HumGen/hg-muscle-aging | |
| tesla-fs.lumcnet.prod.intern:/shark-lts/hg-exon-skip | /LTstorage/HumGen/hg-exon-skip | |
| tesla-fs.lumcnet.prod.intern:/shark-lts/group-thoen-data | /LTstorage/HumGen/group-thoen-data | |
| tesla-fs.lumcnet.prod.intern:/shark-lts/hg-polyglutamine-research | /LTstorage/HumGen/hg-polyglutamine-research | |
| tesla-fs.lumcnet.prod.intern:/shark-lts/biosemantics-archief | /LTstorage/HumGen/biosemantics-archief |
CIFS exports from Isilon accessible from within the LUMC
- Nas.isilon.lumcnet.prod.intern\lgtc$ -- Only for the LGTC HiSeq sequencers
Special Folders on the Shark cluster
- /home -- folder for your home directory (financed by MolEpi, LGTC, Div4)
- /bam-export -- folder that can be accessed by the https://barmsijs.lumc.nl webserver (financed by MolEpi, LGTC, Div4)
- /usr/local -- folder for shared tools, reference sets, etc. (financed by MolEpi, LGTC, Div4)
- /usr/local/Genomes -- Reference sequences and indexes.
- /usr/local/NGSTestSets -- Test sets.
Reference Genomes, index for the most common tools (/usr/local/Genomes/*)
| Genome | build |
|---|---|
| H.Sapiens | hg18,hg19,hg19_sorted,GRCh38 |
| M.Musculus | mm9,mm10_sorted |
| A.pittii | LUH13119 |
| A.thaliana | TAIR10 |
| C.elegans | ce10 |
| C.lupus | CanFam3.1 |
| D.Melanogaster | dm3 |
| E.coli | |
| G.Gallus | galGal4 |
| Gorilla.gorilla | gorGor3.1 |
| L.dominicanus | |
| phiX | phiX174 |
| Lambda | |
| R.norvegicus | rn5 |
| Silva_16s | r102,r119 |
| S.tuberosum | PGSC_DM_v4.03 |
Where to Store what data, Only for research data
- All data should be stored in your department data share located in /data/
- /home is only settings, scripts and libraries
- /bam-export is for files that you want to share with the world or in the UCSC genome browser
- /usr/local/Genomes is for reference genomes, can only be written by users in the genomes group