Network_shares
Last edited by mpvillerius
Dec 05, 2017
Network Shares
Important information regarding backup
There are no backups made on all the NFS shares!!
It is your own responsibility to have a backup for the data you use on the HPC isilon storage connected to Shark.
NFS exports from HPC Isilon storage only for the Shark cluster
NFS export
Mount point
Quota
resource.isilon.lumcnet.prod.intern:/ifs/exports/home
/home
1T
resource.isilon.lumcnet.prod.intern:/ifs/exports/system
/share/isilon/system
3T
resource.isilon.lumcnet.prod.intern:/ifs/exports/UCSC-bam
/bam-export
1T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV4/hem-cellgenomics
/data/DIV4/hem-cellgenomics
1T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/REUM
/data/DIV2/REUM
6T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV4/hem-leukemia
/data/DIV4/hem-leukemia
16T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/HumGen
/data/DIV5/HumGen
37T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/LGTC/equipment
/data/lgtc/equipment
66T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV3/ngs-sarcoma
/data/DIV3/ngs-sarcoma
1T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/radiologie-hpc
/data/DIV2/radiologie-hpc
3T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV4/ihb-diabetes
/data/DIV4/ihb-diabetes
5T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV3/path_colonmor
/data/DIV3/path_colonmor
2T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/LGTC
/data/LGTC
105T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/KG
/data/DIV5/KG
35T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/MolEpi
/data/MolEpi
140T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/BMS
/data/DIV5/BMS
15T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/GoNL
/data/DIV5/GoNL
64T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV4/mmb
/data/DIV4/mmb
2T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/endo-chipseq
/data/DIV2/endo-chipseq
1T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/Generade
/data/Generade
1T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/LKEB/libc-psychiatrie
/data/DIV2/LKEB/libc-psychiatrie
2T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/LKEB/libc
/data/DIV2/LKEB/libc
8T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/LGTC/projects
/data/lgtc/projects
39T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/SASC
/data/DIV5/SASC
50T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV4/mm-expmic
/data/DIV4/mm-expmic
1T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/Education
/data/Education
500G
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV3/huid-derl
/data/DIV3/huid-derl
1T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/card-prosper-exome
/data/DIV2/card-prosper-exome
50G
NFS exports from Long Term Storage only for the Shark cluster
NFS export
Mount point
Quota
tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-devilee
/LTstorage/HumGen/hg-groep-devilee
tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-willemsvandijk
/LTstorage/HumGen/hg-groep-willemsvandijk
tesla-fs.lumcnet.prod.intern:/shark-lts/hem-research-archief
/LTstorage/DIV4/hem-research-archief
tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-peters
/LTstorage/HumGen/hg-groep-peters
tesla-fs.lumcnet.prod.intern:/shark-lts/hg-sk-microbiota
/LTstorage/HumGen/hg-sk-microbiota
tesla-fs.lumcnet.prod.intern:/shark-lts/fldo-storage
/LTstorage/HumGen/fldo-storage
tesla-fs.lumcnet.prod.intern:/shark-lts/dermatlab-data
/LTstorage/DIV3/dermatlab-data
tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-vandermaarel
/LTstorage/HumGen/hg-groep-vandermaarel
tesla-fs.lumcnet.prod.intern:/shark-lts/reum-lts
/LTstorage/DIV2/REUM
tesla-fs.lumcnet.prod.intern:/shark-lts/ana-cm-data
/LTstorage/DIV4/ANA/cm-data
tesla-fs.lumcnet.prod.intern:/shark-lts/kg-ngs-diagnostiek
/LTstorage/KG/ngs-diagnostiek
tesla-fs.lumcnet.prod.intern:/shark-lts/hg-muscle-aging
/LTstorage/HumGen/hg-muscle-aging
tesla-fs.lumcnet.prod.intern:/shark-lts/hg-exon-skip
/LTstorage/HumGen/hg-exon-skip
tesla-fs.lumcnet.prod.intern:/shark-lts/group-thoen-data
/LTstorage/HumGen/group-thoen-data
tesla-fs.lumcnet.prod.intern:/shark-lts/hg-polyglutamine-research
/LTstorage/HumGen/hg-polyglutamine-research
tesla-fs.lumcnet.prod.intern:/shark-lts/biosemantics-archief
/LTstorage/HumGen/biosemantics-archief
CIFS exports from Isilon accessible from within the LUMC
Nas.isilon.lumcnet.prod.intern\lgtc$ -- Only for the LGTC HiSeq sequencers
Special Folders on the Shark cluster
/home -- folder for your home directory (financed by MolEpi, LGTC, Div4)
/bam-export -- folder that can be accessed by the https://barmsijs.lumc.nl webserver (financed by MolEpi, LGTC, Div4)
/usr/local -- folder for shared tools, reference sets, etc. (financed by MolEpi, LGTC, Div4)
/usr/local/Genomes -- Reference sequences and indexes.
/usr/local/NGSTestSets -- Test sets .
Reference Genomes, index for the most common tools (/usr/local/Genomes/*)
Genome
build
H.Sapiens
hg18,hg19,hg19_sorted,GRCh38
M.Musculus
mm9,mm10_sorted
A.pittii
LUH13119
A.thaliana
TAIR10
C.elegans
ce10
C.lupus
CanFam3.1
D.Melanogaster
dm3
E.coli
G.Gallus
galGal4
Gorilla.gorilla
gorGor3.1
L.dominicanus
phiX
phiX174
Lambda
R.norvegicus
rn5
Silva_16s
r102,r119
S.tuberosum
PGSC_DM_v4.03
Where to Store what data, Only for research data
All data should be stored in your department data share located in /data/
/home is only settings, scripts and libraries
/bam-export is for files that you want to share with the world or in the UCSC genome browser
/usr/local/Genomes is for reference genomes, can only be written by users in the genomes group