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Network_shares

Last edited by mpvillerius
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Network Shares

Important information regarding backup

There are no backups made on all the NFS shares!!
It is your own responsibility to have a backup for the data you use on the HPC isilon storage connected to Shark.

NFS exports from HPC Isilon storage only for the Shark cluster

NFS export Mount point Quota
resource.isilon.lumcnet.prod.intern:/ifs/exports/home /home 1T
resource.isilon.lumcnet.prod.intern:/ifs/exports/system /share/isilon/system 3T
resource.isilon.lumcnet.prod.intern:/ifs/exports/UCSC-bam /bam-export 1T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV4/hem-cellgenomics /data/DIV4/hem-cellgenomics 1T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/REUM /data/DIV2/REUM 6T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV4/hem-leukemia /data/DIV4/hem-leukemia 16T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/HumGen /data/DIV5/HumGen 37T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/LGTC/equipment /data/lgtc/equipment 66T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV3/ngs-sarcoma /data/DIV3/ngs-sarcoma 1T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/radiologie-hpc /data/DIV2/radiologie-hpc 3T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV4/ihb-diabetes /data/DIV4/ihb-diabetes 5T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV3/path_colonmor /data/DIV3/path_colonmor 2T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/LGTC /data/LGTC 105T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/KG /data/DIV5/KG 35T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/MolEpi /data/MolEpi 140T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/BMS /data/DIV5/BMS 15T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/GoNL /data/DIV5/GoNL 64T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV4/mmb /data/DIV4/mmb 2T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/endo-chipseq /data/DIV2/endo-chipseq 1T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/Generade /data/Generade 1T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/LKEB/libc-psychiatrie /data/DIV2/LKEB/libc-psychiatrie 2T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/LKEB/libc /data/DIV2/LKEB/libc 8T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/LGTC/projects /data/lgtc/projects 39T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/SASC /data/DIV5/SASC 50T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV4/mm-expmic /data/DIV4/mm-expmic 1T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/Education /data/Education 500G
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV3/huid-derl /data/DIV3/huid-derl 1T
resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/card-prosper-exome /data/DIV2/card-prosper-exome 50G

NFS exports from Long Term Storage only for the Shark cluster

NFS export Mount point Quota
tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-devilee /LTstorage/HumGen/hg-groep-devilee
tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-willemsvandijk /LTstorage/HumGen/hg-groep-willemsvandijk
tesla-fs.lumcnet.prod.intern:/shark-lts/hem-research-archief /LTstorage/DIV4/hem-research-archief
tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-peters /LTstorage/HumGen/hg-groep-peters
tesla-fs.lumcnet.prod.intern:/shark-lts/hg-sk-microbiota /LTstorage/HumGen/hg-sk-microbiota
tesla-fs.lumcnet.prod.intern:/shark-lts/fldo-storage /LTstorage/HumGen/fldo-storage
tesla-fs.lumcnet.prod.intern:/shark-lts/dermatlab-data /LTstorage/DIV3/dermatlab-data
tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-vandermaarel /LTstorage/HumGen/hg-groep-vandermaarel
tesla-fs.lumcnet.prod.intern:/shark-lts/reum-lts /LTstorage/DIV2/REUM
tesla-fs.lumcnet.prod.intern:/shark-lts/ana-cm-data /LTstorage/DIV4/ANA/cm-data
tesla-fs.lumcnet.prod.intern:/shark-lts/kg-ngs-diagnostiek /LTstorage/KG/ngs-diagnostiek
tesla-fs.lumcnet.prod.intern:/shark-lts/hg-muscle-aging /LTstorage/HumGen/hg-muscle-aging
tesla-fs.lumcnet.prod.intern:/shark-lts/hg-exon-skip /LTstorage/HumGen/hg-exon-skip
tesla-fs.lumcnet.prod.intern:/shark-lts/group-thoen-data /LTstorage/HumGen/group-thoen-data
tesla-fs.lumcnet.prod.intern:/shark-lts/hg-polyglutamine-research /LTstorage/HumGen/hg-polyglutamine-research
tesla-fs.lumcnet.prod.intern:/shark-lts/biosemantics-archief /LTstorage/HumGen/biosemantics-archief

CIFS exports from Isilon accessible from within the LUMC

  • Nas.isilon.lumcnet.prod.intern\lgtc$ -- Only for the LGTC HiSeq sequencers

Special Folders on the Shark cluster

  • /home -- folder for your home directory (financed by MolEpi, LGTC, Div4)
  • /bam-export -- folder that can be accessed by the https://barmsijs.lumc.nl webserver (financed by MolEpi, LGTC, Div4)
  • /usr/local -- folder for shared tools, reference sets, etc. (financed by MolEpi, LGTC, Div4)
  • /usr/local/Genomes -- Reference sequences and indexes.
  • /usr/local/NGSTestSets -- Test sets.

Reference Genomes, index for the most common tools (/usr/local/Genomes/*)

Genome build
H.Sapiens hg18,hg19,hg19_sorted,GRCh38
M.Musculus mm9,mm10_sorted
A.pittii LUH13119
A.thaliana TAIR10
C.elegans ce10
C.lupus CanFam3.1
D.Melanogaster dm3
E.coli
G.Gallus galGal4
Gorilla.gorilla gorGor3.1
L.dominicanus
phiX phiX174
Lambda
R.norvegicus rn5
Silva_16s r102,r119
S.tuberosum PGSC_DM_v4.03

Where to Store what data, Only for research data

  • All data should be stored in your department data share located in /data/
  • /home is only settings, scripts and libraries
  • /bam-export is for files that you want to share with the world or in the UCSC genome browser
  • /usr/local/Genomes is for reference genomes, can only be written by users in the genomes group