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...@@ -33,46 +33,40 @@ ...@@ -33,46 +33,40 @@
|resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/card-prosper-exome|**/data/DIV2/card-prosper-exome**|50G| |resource.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/card-prosper-exome|**/data/DIV2/card-prosper-exome**|50G|
### NFS exports from Long Term Storage only for the Shark cluster ### NFS exports from Long Term Storage only for the Shark cluster
* tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-devilee on **/LTstorage/HumGen/hg-groep-devilee** | NFS export | Mount point | Quota |
* tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-willemsvandijk on **/LTstorage/HumGen/hg-groep-willemsvandijk** |-------------|:-------------:|:-----:|
* tesla-fs.lumcnet.prod.intern:/shark-lts/hem-research-archief on **/LTstorage/DIV4/hem-research-archief** |tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-devilee|**/LTstorage/HumGen/hg-groep-devilee**| |
* tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-peters on **/LTstorage/HumGen/hg-groep-peters** |tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-willemsvandijk|**/LTstorage/HumGen/hg-groep-willemsvandijk**| |
* tesla-fs.lumcnet.prod.intern:/shark-lts/hg-sk-microbiota on **/LTstorage/HumGen/hg-sk-microbiota** |tesla-fs.lumcnet.prod.intern:/shark-lts/hem-research-archief|**/LTstorage/DIV4/hem-research-archief**| |
* tesla-fs.lumcnet.prod.intern:/shark-lts/fldo-storage on **/LTstorage/HumGen/fldo-storage** |tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-peters|**/LTstorage/HumGen/hg-groep-peters**| |
* tesla-fs.lumcnet.prod.intern:/shark-lts/dermatlab-data on **/LTstorage/DIV3/dermatlab-data** |tesla-fs.lumcnet.prod.intern:/shark-lts/hg-sk-microbiota|**/LTstorage/HumGen/hg-sk-microbiota**| |
* tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-vandermaarel on **/LTstorage/HumGen/hg-groep-vandermaarel** |tesla-fs.lumcnet.prod.intern:/shark-lts/fldo-storage|**/LTstorage/HumGen/fldo-storage**| |
* tesla-fs.lumcnet.prod.intern:/shark-lts/reum-lts on **/LTstorage/DIV2/REUM** |tesla-fs.lumcnet.prod.intern:/shark-lts/dermatlab-data|**/LTstorage/DIV3/dermatlab-data**| |
* tesla-fs.lumcnet.prod.intern:/shark-lts/ana-cm-data on **/LTstorage/DIV4/ANA/cm-data** |tesla-fs.lumcnet.prod.intern:/shark-lts/hg-groep-vandermaarel|**/LTstorage/HumGen/hg-groep-vandermaarel**| |
* tesla-fs.lumcnet.prod.intern:/shark-lts/kg-ngs-diagnostiek on **/LTstorage/KG/ngs-diagnostiek** |tesla-fs.lumcnet.prod.intern:/shark-lts/reum-lts|**/LTstorage/DIV2/REUM**| |
* tesla-fs.lumcnet.prod.intern:/shark-lts/hg-muscle-aging on **/LTstorage/HumGen/hg-muscle-aging** |tesla-fs.lumcnet.prod.intern:/shark-lts/ana-cm-data|**/LTstorage/DIV4/ANA/cm-data**| |
* tesla-fs.lumcnet.prod.intern:/shark-lts/hg-exon-skip on **/LTstorage/HumGen/hg-exon-skip** |tesla-fs.lumcnet.prod.intern:/shark-lts/kg-ngs-diagnostiek|**/LTstorage/KG/ngs-diagnostiek**| |
* tesla-fs.lumcnet.prod.intern:/shark-lts/group-thoen-data on **/LTstorage/HumGen/group-thoen-data** |tesla-fs.lumcnet.prod.intern:/shark-lts/hg-muscle-aging|**/LTstorage/HumGen/hg-muscle-aging**| |
* tesla-fs.lumcnet.prod.intern:/shark-lts/hg-polyglutamine-research on **/LTstorage/HumGen/hg-polyglutamine-research** |tesla-fs.lumcnet.prod.intern:/shark-lts/hg-exon-skip|**/LTstorage/HumGen/hg-exon-skip**| |
* tesla-fs.lumcnet.prod.intern:/shark-lts/biosemantics-archief on **/LTstorage/HumGen/biosemantics-archief** |tesla-fs.lumcnet.prod.intern:/shark-lts/group-thoen-data|**/LTstorage/HumGen/group-thoen-data**| |
|tesla-fs.lumcnet.prod.intern:/shark-lts/hg-polyglutamine-research|**/LTstorage/HumGen/hg-polyglutamine-research**| |
|tesla-fs.lumcnet.prod.intern:/shark-lts/biosemantics-archief|**/LTstorage/HumGen/biosemantics-archief**| |
### CIFS exports from Isilon accessible from within the LUMC ### CIFS exports from Isilon accessible from within the LUMC
* Nas.isilon.lumcnet.prod.intern\lgtc$ -- *Only for the LGTC !HiSeq sequencers* * Nas.isilon.lumcnet.prod.intern\lgtc$ -- Only for the LGTC HiSeq sequencers
### Folders on the Shark cluster ### Special Folders on the Shark cluster
* /data/MolEpi -- *folder for the !MolEpi and !MedStat group* **quota size 65T** financed by !MolEpi * /home -- *folder for your home directory* (financed by MolEpi, LGTC, Div4)
* /data/DIV5/GoNL -- *folder for the GoNL project* **quota size 140T** financed by LUMC, Division 5 and 70T donated by the MolEpi group * /bam-export -- *folder that can be accessed by the http://barmsijs.lumc.nl webserver* (financed by MolEpi, LGTC, Div4)
* /data/LGTC -- *folder for the LGTC group* **quota size 105T** financed by the LGTC * /usr/local -- *folder for shared tools, reference sets, etc.* (financed by MolEpi, LGTC, Div4)
* /data/DIV5/HumGen -- *folder for the hg_bioinf group* **quota size 37T** financed by HumGen * /usr/local/Genomes -- Reference sequences and indexes.
* /data/DIV3/huid-derl -- *folder for the huid-derl group* **quota size 1T** financed by huid-derl * /usr/local/NGSTestSets -- [Test sets](testsets).
* /data/DIV5/SASC -- *folder for the sasc group* **quota size 5T** taken from the GoNL div5 part
* /data/DIV5/BMS -- *folder for the para group* **quota size 15T** financed by the para group
* /data/DIV5/KG -- *folder for the KG group* **quota size 27T** financed by the KG group
* /home -- *folder for your home directory* **quota size 1T** financed by !MolEpi, LGTC, Div5
* /bam-export -- *folder that can be accessed by the http://barmsijs.lumc.nl webserver* **quota size 1T** financed by !MolEpi, LGTC, Div5
* /usr/local -- *folder for shared tools, reference sets, etc.* **quote size 1T** financed by !MolEpi, LGTC, Div5
* /usr/local/Genomes -- Reference sequences and indexes.
* /usr/local/NGSTestSets -- [Test sets](testsets).
### Reference Genomes, index for the most common tools (/usr/local/Genomes/*) ### Reference Genomes, index for the most common tools (/usr/local/Genomes/*)
| Genome | build |
||Genome||build|| |-------------|:-------------:|
||H.Sapiens||hg18,hg19,hg19_sorted|| |H.Sapiens|hg18,hg19,hg19_sorted|
||M.Musculus||mm9,mm10_sorted|| |M.Musculus|mm9,mm10_sorted|
### Where to Store what data, Only for research data ### Where to Store what data, Only for research data
||Group||Directory||what type of files||Directory Quota|| ||Group||Directory||what type of files||Directory Quota||
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