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Nov 06, 2015
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Villerius
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## Network Shares
----
### NFS exports from Isilon storage only for the Shark cluster
*
research.isilon.lumcnet.prod.intern:/ifs/exports/home --
*Mount point /home*
*
research.isilon.lumcnet.prod.intern:/ifs/exports/UCSC-bam --
*Mount point /bam-export*
*
research.isilon.lumcnet.prod.intern:/ifs/exports/data --
*Mount point /data*
*
research.isilon.lumcnet.prod.intern:/ifs/exports/system --
*Mount point /share*
*
research.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV3/huid-derl --
*Mount point /data/DIV3/huid-derl*
*
research.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/BMS --
*Mount point /data/DIV5/BMS*
*
research.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/GoNL --
*Mount point /data/DIV5/GoNL*
*
research.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/HumGen --
*Mount point /data/DIV5/HumGen*
*
research.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/KG --
*Mount point /data/DIV5/KG*
*
research.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV5/SASC --
*Mount point /data/DIV5/SASC*
*
research.isilon.lumcnet.prod.intern:/ifs/exports/data/LGTC --
*Mount point /data/LGTC*
*
research.isilon.lumcnet.prod.intern:/ifs/exports/data/MolEpi --
*Mount point /data/MolEpi*
*
research.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/LKEB/libc --
*Mount point /data/DIV2/libc*
*
research.isilon.lumcnet.prod.intern:/ifs/exports/data/DIV2/REUM --
*Mount point /data/DIV2/REUM*
### CIFS exports from Isilon accessible from within the LUMC
*
Nas.isilon.lumcnet.prod.intern
\l
gtc$ --
*Only for the LGTC !HiSeq sequencers*
### Folders on the Shark cluster
*
/data/MolEpi --
*folder for the !MolEpi and !MedStat group*
**quota size 65T**
financed by !MolEpi
*
/data/DIV5/GoNL --
*folder for the GoNL project*
**quota size 140T**
financed by LUMC, Division 5 and 70T donated by the MolEpi group
*
/data/LGTC --
*folder for the LGTC group*
**quota size 105T**
financed by the LGTC
*
/data/DIV5/HumGen --
*folder for the hg_bioinf group*
**quota size 37T**
financed by HumGen
*
/data/DIV3/huid-derl --
*folder for the huid-derl group*
**quota size 1T**
financed by huid-derl
*
/data/DIV5/SASC --
*folder for the sasc group*
**quota size 5T**
taken from the GoNL div5 part
*
/data/DIV5/BMS --
*folder for the para group*
**quota size 15T**
financed by the para group
*
/data/DIV5/KG --
*folder for the KG group*
**quota size 27T**
financed by the KG group
*
/home --
*folder for your home directory*
**quota size 1T**
financed by !MolEpi, LGTC, Div5
*
/bam-export --
*folder that can be accessed by the http://barmsijs.lumc.nl webserver*
**quota size 1T**
financed by !MolEpi, LGTC, Div5
*
/usr/local --
*folder for shared tools, reference sets, etc.*
**quote size 1T**
financed by !MolEpi, LGTC, Div5
*
/usr/local/Genomes -- Reference sequences and indexes.
*
/usr/local/NGSTestSets --
[
Test sets
](
testsets
)
.
### Reference Genomes, index for the most common tools (/usr/local/Genomes/*)
||Genome||build||
||H.Sapiens||hg18,hg19,hg19_sorted||
||M.Musculus||mm9,mm10_sorted||
### Where to Store what data, Only for research data
||Group||Directory||what type of files||Directory Quota||
||!MolEpi||/data/MolEpi||all files and data types||65T||
||!MedStat||/data/MolEpi||all files and data types||65T||
||LGTC||/data/LGTC||all files and data types||105T||
||hg_BioInf||/data/DIV5/HumGen/||all files and data types||37T||
||GoNL||/data/DIV5/GoNL||all files and data types||140T||
||huid-derl||/data/DIV3/huid-derl||all files and data types||1T||
||SASC||/data/DIV5/SASC|||all files and data types||5T||
||KG||/data/DIV5/KG||all files and data types||27T||
||BMS||/data/DIV5/BMS||all files and data types||15T||
||"All"||/home/
`username`
||only settings and scripts||10G per user||
||"All"||/bam-export||files that you want to share with the world or UCSC genome browser||1T||
