EnvironmentModules.md

+## Environment Modules
+
+ * All environmens on the new Shark are controlled with environment modules.
+ * The default modules that are loaded are OpenGridScheduler and History.
+ * Modules can be loaded, unloaded and switched.
+ * Multiple modules can be loaded, Your $PATH will be adjusted and the latest module will have it's path as first path in your PATH environment!
+
+To view the loaded modules use;
+
+
+    #!sh
+    $ module list 
+    Currently Loaded Modulefiles:
+      1) OpenGridScheduler   2) History
+
+
+To view the modules available:
+
+
+    #!sh
+    $ module avail 
+
+------------------------------------------------------------------------------------ /usr/local/Modules/versions -------------------------------------------------------------------------------------
+3.2.10
+
+------------------------------------------------------------------------------- /usr/local/Modules/3.2.10/modulefiles --------------------------------------------------------------------------------
+dot                             java/Oracle-JRE-1.7             module-info                     OpenGridScheduler               python/3.4.1                    R/3.0.2
+History                         java/Oracle-JRE-1.8             modules                         PacificBiosciences/rDnaTools    qiime                           R/3.1.1
+java/openjdk-7                  module-git                      null                            PacificBiosciences/smrtanalysis R/2.15.3                        use.own
+}}}
+To load a module:
+
+
+    #!sh
+    $ module load R/3.1.1
+
+To switch a module from R3.1.1 to R3.0.2 use:
+
+    #!sh
+    $ module switch R/3.1.1 R/3.0.2
+
+To unload a module:
+
+
+    #!sh
+    $ module unload R/3.0.2
+
+