Commits · b6c8c556fff610a19c9c7d04eaa2184681f178f2 · SASC / sentinel-legacy

23 Jun, 2015 1 commit
- Add percentage statistics to seqstats data points · b6c8c556
  bow authored Jun 23, 2015
  
  b6c8c556
22 Jun, 2015 3 commits
- Add initial files for Sphinx documentation · 8464c85d
  bow authored Jun 22, 2015
  
  8464c85d
- Add settings for generating ScalaDoc and Sphinx in build file · 74d28a6f
  bow authored Jun 22, 2015
  
  74d28a6f
- Fix wrong reference in ScalaDoc · 50cb67f9
  bow authored Jun 22, 2015
  
  50cb67f9
20 Jun, 2015 1 commit
- Add more metrics to alignment stats (data points and aggregate) · f9674eb0
  bow authored Jun 19, 2015
  
  f9674eb0
18 Jun, 2015 5 commits
- Rename alignment stats attributes for consistency · 9825b368
  bow authored Jun 18, 2015
  
  9825b368
- Add proper pair counts to alignment stats · ed3d1ca9
  bow authored Jun 18, 2015
  
  ed3d1ca9
- Rename nSingletons -> nReadsSingleton in alignment stats · f06833d9
  bow authored Jun 18, 2015
  
  f06833d9
- Add sbt-site plugin · 01b81575
  bow authored Jun 18, 2015
  
  01b81575
- Refactor build file · d7a40cd2
  bow authored Jun 18, 2015
  
  d7a40cd2
17 Jun, 2015 4 commits
- Add license header to source files · d9722f35
  bow authored Jun 17, 2015
  
  d9722f35
- Add license template for source files. · 4022c449
  bow authored Jun 17, 2015
  
  4022c449
- Update LICENSE.md formatting · d24f49c1
  bow authored Jun 17, 2015
  
  d24f49c1
- Add plugin for file header · 0b8fdf7c
  bow authored Jun 17, 2015
  
  0b8fdf7c
16 Jun, 2015 3 commits
- Refactor user-related utility functions into a User object · 68e410bf
  bow authored Jun 16, 2015
  
  68e410bf
- Refactor getRun method into two functions · b9b80812
  bow authored Jun 16, 2015
  
  b9b80812
- Add ScalaDoc to all public objects · 8decc17a
  bow authored Jun 16, 2015
  
  8decc17a
15 Jun, 2015 6 commits
- Update missed count -> nDataPoints rename · 5e0a9e85
  bow authored Jun 15, 2015
  
  5e0a9e85
- Add tests for optional authentication on /stats endpoints · 1410b4cf
  bow authored Jun 15, 2015
  
  1410b4cf
- Add runId to labels and remove uploaderId from BaseLibDocument · e0ba68a9
  bow authored Jun 15, 2015
  
  e0ba68a9
- Rename 'mean' to 'avg' for clarity (disambiguate with similar sounding 'min') · 29e0371a
  bow authored Jun 15, 2015
  
  29e0371a
- Rename 'count' to 'nDataPoints' for clarity · 1067586a
  bow authored Jun 15, 2015
  
  1067586a
- Use more proper name for name container (labels) · 930497d0
  bow authored Jun 15, 2015
  
  930497d0
13 Jun, 2015 3 commits
- Implement optional name output on GET /stats/gentrap/sequences for the owner of the datapoints · 5f5a5203
  bow authored Jun 13, 2015
  
  5f5a5203
- Simplify Lib model by flattening stats and files container · 42b7a1ab
  bow authored Jun 13, 2015
  
  42b7a1ab
- Refactors and renames for stats · db983810
  bow authored Jun 13, 2015
  
  db983810
12 Jun, 2015 6 commits
- Initial implementation of optional name output on GET... · 0c38a516
  bow authored Jun 12, 2015
```
Initial implementation of optional name output on GET /stats/gentrap/alignments for the owner of the datapoints
```
  0c38a516
- Refactor GentrapOutputProcessor · 9b79e292
  bow authored Jun 12, 2015
  
  9b79e292
- Add test for DELETE /runs/:runId for admins · 02378451
  bow authored Jun 12, 2015
  
  02378451
- Add and test GET /runs/:runId for admins · bb30db4b
  bow authored Jun 12, 2015
  
  bb30db4b
- Update spec · fc378d9d
  bow authored Jun 12, 2015
  
  fc378d9d
- Add missing X-SENTINEL-KEY in endpoints spec · b692e9aa
  bow authored Jun 12, 2015
  
  b692e9aa
11 Jun, 2015 5 commits
- Streamline /stats endpoints · 4249292b
  bow authored Jun 11, 2015
  
  4249292b
- Use name parameters that are more descriptive · 3b494f67
  bow authored Jun 11, 2015
  
  3b494f67
- Rename /aggregates to /aggregate · a914c43f
  bow authored Jun 11, 2015
  
  a914c43f
- Add tests for aggregation when no data points can be aggregated · f8bb9f1e
  bow authored Jun 11, 2015
  
  f8bb9f1e
- Impement and test aggregation on gentrap sequence stats · b3e4330b
  bow authored Jun 11, 2015
  
  b3e4330b
10 Jun, 2015 3 commits
- Implement and test aggregation on gentrap alignment stats · 72341f8a
  bow authored Jun 10, 2015
  
  72341f8a
- Update specs for consistency · 5dd98d61
  bow authored Jun 10, 2015
  
  5dd98d61
- Add helper method to convert 'count' to int/long in aggregation results · 17d3e367
  bow authored Jun 10, 2015
  
  17d3e367