Rename ReferenceRecord.name -> ReferenceRecord.refName

src/main/scala/nl/lumc/sasc/sentinel/models/ReferenceRecord.scala

@@ -27,14 +27,14 @@ import org.bson.types.ObjectId
  * @param refId Database IDs.
  * @param contigs Record of all contigs / chromosomes in this reference sequence.
  * @param combinedMd5 MD5 checksum of the concatenated string of all contig MD5 checksums, sorted alphabetically.
- * @param name Reference sequence name.
+ * @param refName Reference sequence name.
  * @param creationTimeUtc UTC time when the reference record was created.
  */
 case class ReferenceRecord(
   @Key("_id") refId: ObjectId,
   contigs: Seq[ReferenceContigRecord],
   combinedMd5: String,
-  name: Option[String] = None,
+  refName: Option[String] = None,
   species: Option[String] = None,
   creationTimeUtc: Option[Date] = None)
 

src/main/scala/nl/lumc/sasc/sentinel/processors/gentrap/GentrapV04InputProcessor.scala

@@ -58,7 +58,7 @@ class GentrapV04InputProcessor(protected val mongo: MongodbAccessObject)
       combinedMd5 = calcMd5(contigs.map(_.md5).sorted),
       contigs = contigs,
       species = (refJson \ "species").extractOpt[String],
-      name = (refJson \ "name").extractOpt[String],
+      refName = (refJson \ "name").extractOpt[String],
       creationTimeUtc = Option(getUtcTimeNow))
   }