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SASC
sentinel-legacy
Commits
bc6a5228
Commit
bc6a5228
authored
Jul 10, 2015
by
bow
Browse files
Update Gentrap summary schema for executables part
parent
b8d30cc3
Changes
1
Hide whitespace changes
Inline
Side-by-side
src/main/resources/schemas/biopet/v0.4/gentrap.json
View file @
bc6a5228
...
...
@@ -70,7 +70,12 @@
"executables"
:
{
"description"
:
"Executables used in the Gentrap run"
,
"type"
:
"object"
,
"additionalProperties"
:
{
"$ref"
:
"#/definitions/executable"
}
"additionalProperties"
:
{
"anyOf"
:
[
{
"$ref"
:
"#/definitions/executable"
},
{
"$ref"
:
"#/definitions/jar"
}
]
}
},
"settings"
:
{
...
...
@@ -204,7 +209,12 @@
"executables"
:
{
"description"
:
"Executables used in BamMetrics"
,
"type"
:
"object"
,
"additionalProperties"
:
{
"$ref"
:
"#/definitions/executable"
}
"additionalProperties"
:
{
"anyOf"
:
[
{
"$ref"
:
"#/definitions/executable"
},
{
"$ref"
:
"#/definitions/jar"
}
]
}
},
"stats"
:
{
...
...
@@ -268,7 +278,12 @@
"executables"
:
{
"description"
:
"Executables used in Flexiprep"
,
"type"
:
"object"
,
"additionalProperties"
:
{
"$ref"
:
"#/definitions/executable"
}
"additionalProperties"
:
{
"anyOf"
:
[
{
"$ref"
:
"#/definitions/executable"
},
{
"$ref"
:
"#/definitions/jar"
}
]
}
},
"settings"
:
{
...
...
@@ -374,7 +389,12 @@
"executables"
:
{
"description"
:
"Executables used in Mapping"
,
"type"
:
"object"
,
"additionalProperties"
:
{
"$ref"
:
"#/definitions/executable"
}
"additionalProperties"
:
{
"anyOf"
:
[
{
"$ref"
:
"#/definitions/executable"
},
{
"$ref"
:
"#/definitions/jar"
}
]
}
},
"settings"
:
{
...
...
@@ -441,7 +461,12 @@
"executables"
:
{
"description"
:
"Executables used in BamMetrics"
,
"type"
:
"object"
,
"additionalProperties"
:
{
"$ref"
:
"#/definitions/executable"
}
"additionalProperties"
:
{
"anyOf"
:
[
{
"$ref"
:
"#/definitions/executable"
},
{
"$ref"
:
"#/definitions/jar"
}
]
}
},
"stats"
:
{
...
...
@@ -553,6 +578,11 @@
"type"
:
[
"string"
,
"null"
]
},
"path"
:
{
"description"
:
"Path to executable"
,
"type"
:
"string"
},
"jar_md5"
:
{
"description"
:
"MD5 checksum of the JAR (only for JAR-packaged tools)"
,
"type"
:
[
"string"
,
"null"
]
...
...
@@ -561,6 +591,51 @@
"java_md5"
:
{
"description"
:
"MD5 checksum of the java executable (only for JAR-packaged tools)"
,
"type"
:
[
"string"
,
"null"
]
},
"java_version"
:
{
"description"
:
"Version of the java executable used to execute the JAR"
,
"type"
:
"string"
},
"java_md5"
:
{
"description"
:
"MD5 checksum of the java executable"
,
"type"
:
[
"string"
,
"null"
]
},
"jar_path"
:
{
"description"
:
"Path to the JAR file (null if not available)"
,
"type"
:
[
"string"
,
"null"
]
}
}
},
"jar"
:
{
"description"
:
"Entry for storing tools packaged as JAR files"
,
"type"
:
"object"
,
"required"
:
[
"version"
,
"java_md5"
,
"java_version"
,
"jar_path"
],
"additionalProperties"
:
false
,
"properties"
:
{
"version"
:
{
"description"
:
"Version of the JAR package, null if not available"
,
"type"
:
[
"string"
,
"null"
]
},
"java_version"
:
{
"description"
:
"Version of the java executable used to execute the JAR"
,
"type"
:
"string"
},
"java_md5"
:
{
"description"
:
"MD5 checksum of the java executable"
,
"type"
:
[
"string"
,
"null"
]
},
"jar_path"
:
{
"description"
:
"Path to the JAR file (null if not available)"
,
"type"
:
[
"string"
,
"null"
]
}
}
},
...
...
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