Update requirements to MongoDB 3.2

README.md

@@ -8,10 +8,10 @@ Sentinel is a JSON-based database for next-generation sequencing statistics. Que
 
   * Java 8 (must be set as the default `java`)
   * Scala 2.11.6
-  * MongoDB 3.0 (running on localhost port 27017 for live development server)
+  * MongoDB 3.2 (running on localhost port 27017 for live development server)
   * Python 2.7 and Sphinx (only when building the documentation)
 
-If MongoDB 3.0 is not available in your official package repository, you can install it from the vendor's repository following the instructions [here](https://docs.mongodb.org/v3.0/administration/install-on-linux/).
+If MongoDB 3.2 is not available in your official package repository, you can install it from the vendor's repository following the instructions [here](https://docs.mongodb.org/v3.2/administration/install-on-linux/).
 
 ## Set Up
 

project/SentinelBuild.scala

@@ -34,7 +34,7 @@ object SentinelBuild extends Build {
     "com.typesafe.akka"       %% "akka-actor"                 % "2.3.6",
     "commons-codec"           %  "commons-codec"              % "1.7",
     "commons-io"              %  "commons-io"                 % "2.4",
-    "de.flapdoodle.embed"     %  "de.flapdoodle.embed.mongo"  % "1.47.3",
+    "de.flapdoodle.embed"     %  "de.flapdoodle.embed.mongo"  % "1.50.2",
     "javax.servlet"           %  "javax.servlet-api"          % "3.1.0"               % "container;compile;provided;test;it",
     "net.databinder.dispatch" %% "dispatch-core"              % "0.11.2",
     "net.databinder.dispatch" %% "dispatch-json4s-jackson"    % "0.11.2",

sentinel/src/main/scala/nl/lumc/sasc/sentinel/testing/EmbeddedMongodbRunner.scala

@@ -31,7 +31,7 @@ import nl.lumc.sasc.sentinel.utils.MongodbAccessObject
 
 trait EmbeddedMongodbRunner {
 
-  protected val mongodVersion = Version.Main.V3_0
+  protected val mongodVersion = Version.Main.V3_2
 
   protected val dbName = "sentinel_testing"
 

sentinel/src/sphinx/devs_setup.rst

@@ -9,7 +9,7 @@ The minimum requirements for a local development environment are:
 
 * `git <https://git-scm.com/>`_ (version >= 1.9)
 * `Java <https://www.java.com/en/>`_ (version >= 1.8)
-* `MongoDB <https://www.mongodb.org/>`_ (version >= 3.0)
+* `MongoDB <https://www.mongodb.org/>`_ (version >= 3.2)
 
 Note that for testing, Sentinel relies on an embedded MongoDB server which it downloads and runs automatically. If you
 are only interested in running tests or are confident enough not to use any development servers, you can skip MongoDB