magpie issueshttps://git.lumc.nl/rig-framework/magpie/-/issues2018-05-02T02:01:07+02:00https://git.lumc.nl/rig-framework/magpie/-/issues/1LOVD reporting format2018-05-02T02:01:07+02:00Wai Yi LeungLOVD reporting formatReport the variants to LOVD in LOVD format.Report the variants to LOVD in LOVD format.Wai Yi LeungWai Yi Leunghttps://git.lumc.nl/rig-framework/magpie/-/issues/2LOVD, extra columns for filtering (translated VCF info fields)2018-05-02T02:01:07+02:00Wai Yi LeungLOVD, extra columns for filtering (translated VCF info fields)Seperate the DP, GQ and PL scores into separate TSV columns per sample.
f.e.g.:
```
INFO CHILD FATHER MOTHER
GT:DP:AD:PL 0/0:50:50,0:0:123:5213 0/1:45:23...Seperate the DP, GQ and PL scores into separate TSV columns per sample.
f.e.g.:
```
INFO CHILD FATHER MOTHER
GT:DP:AD:PL 0/0:50:50,0:0:123:5213 0/1:45:23,22:130,0,654 0/1:65:13,42:20,0,6954
CHILD_GT=0/0
CHILD_DP=50
CHILD_AD=50,0
CHILD_DPREF=50
CHILD_DPALT=0
CHILD_ALTPERC=0
CHILD_PLALT=123
FATHER_GT=0/1
FATHER_DP=45
```
etc.. all values must be tab separated..Wai Yi LeungWai Yi Leung