schedule.md 2.74 KB
Newer Older
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
1 2
# Schedule

Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
3
Presentations from [2017](schedule_2017.md).
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
4

Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
5
- Jan 8.
6
  - [Evolutionary Architectures](http://nealford.com/downloads/Evolutionary_Architectures_by_Neal_Ford.pdf) (Mark S.)
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
7

Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
8 9 10 11
- Jan 15.
  - [VDE with suffix arrays]() ().

- Jan 22:
Leon Mei's avatar
Leon Mei committed
12
  - [BBMRI meta-database schema (permission required)](https://git.lumc.nl/rp3/RP3_RP4_combined_schema) (Davy)
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
13 14

- Jan 29:
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
15
  - [Interactive data visualization application for gene expression]() (Stephen Pieterman).
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
16 17

- Feb 5:
rhpvorderman's avatar
rhpvorderman committed
18
  - [WDL pipelines](https://git.lumc.nl/rhpvorderman/wdl-presentation) (Ruben).
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
19

Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
20
- Feb 12:
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
21
  - Graph databases / triple stores (Mark T.)
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
22 23
  
- Feb 19:
Mihai's avatar
Mihai committed
24
  - [Refactoring Mutalyzer](presentations/development-wd-2018-02-19.pdf) (Mihai)
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
25

Peter van 't Hof's avatar
Peter van 't Hof committed
26 27
- Mar 5:
  - Spark Dataframes (Peter van 't Hof)
Peter van 't Hof's avatar
Peter van 't Hof committed
28 29
  - [Slides](presentations/Dev-meeting_05-03-2018.pdf)
  - Added slide for how to start spark on shark
Peter van 't Hof's avatar
Peter van 't Hof committed
30

Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
31 32 33 34
- Mar 12:
  - AI and variant classification.
  
- Mar 19:
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
35
  - Asynchronous I/O in Python (Bowo)
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
36

Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
37 38 39
- Mar 26:
  - Singularity (Jeroen de C.)

Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
40 41 42 43 44
- April 9:
  - Neural networks in practice (Sander)

- April 16:
  - WDL (Leon)
Leon Mei's avatar
Leon Mei committed
45 46
  - [Notes of LUMC-EMC/CCBC Snakemake meeting](https://docs.google.com/document/d/1aU_yLOYlGfKyZdMUzb7E5-hOr57Y_W1ERgdqu5Qmh68/edit#heading=h.p7tyd9hathx9)
  - [SASC WDL pipeline repo](https://github.com/biowdl)
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
47

Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
48 49 50
- April 23:
  - Discussion on future topics (AI).

Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
51 52 53 54 55 56 57
- May 14:
 - Web tokens (Sander).

- May 28:
  - Automated Conda releases / continuous deployment (Ruben).

- June 4:
Leon Mei's avatar
Leon Mei committed
58
  - Brainstorming AI applications in Genomics (Jeroen/Peter/Sander/Leon/Guy)
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
59 60

- June 11:
Mark Santcroos's avatar
Mark Santcroos committed
61
  - [Single Sign-On with SAML](presentations/sso_development_11_june.pdf) (Mark)
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
62 63

- June 18:
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
64 65
  - Encode pipelines (Dani). 
  
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
66 67
- October 8:
  - New functionalities in Python 3 (Sander).
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
68

Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
69
- October 15:
Mihai's avatar
Mihai committed
70
  - [HGVS parsing](presentations/MLefter_hgvs_parser_2018-10-15.pdf) (Mihai).
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
71 72 73 74 75

- October 22:
  - Structuring programs in QT.

- October 29:
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
76
  - Open Source software licensing and compatibility (Bastian).
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
77

Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
78 79 80
- November 5:
  - Discussion on Ansible deployment (structuring, best practices.)

Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
81
- Upcoming.
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
82
  - Continuous integration (Ruben)
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
83
  - STR extraction (Jonathan)
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
84 85
  - Regulations for medical devices (Alex Vernooij)
  - Kubernetes.
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
86
  - Block chains.
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
87
  - DTL / RSE.
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
88 89
  - Formal languages / grammars.
  - Invite people from imaging/radiology.
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
90
  - Microscopy / Fons Verbeek.
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
91
  - Invite people from proteomics.
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
92 93 94 95 96 97 98
  - Invite people from LCBC.
  - Ontologies.
  - Security / privicy issues (GDPR).
  - Packaging in general.
  - Development cycle.
  - Main purposes of programming languages.
  - General purpose GPU computing.
wgallard's avatar
wgallard committed
99
  - Applied machine learning with SK-learn / scikit (Guy)
Mark Santcroos's avatar
Mark Santcroos committed
100
  - Complexity theory
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
101 102 103 104

- Notes.
  - Generic topics, but with a link to current activities.
  - Technical details of methods, applications more to NGS meeting.
Jeroen F.J. Laros's avatar
Jeroen F.J. Laros committed
105
  - Room for pure theory.