Commit 4b19325c authored by Michèle Huijberts's avatar Michèle Huijberts

copied topic info to Wiki pages

changed the url's to the Wiki pages
parent b3604a3c
......@@ -18,7 +18,6 @@ Support is given by:
For software-specific questions, please consult the colleagues at your own research group.
<p></p>
_ _ _
This page is meant for FSW users. There is also a more general (and more technical) Wiki page with information about Shark and the usage. This page can be found [here](https://git.lumc.nl/shark/SHARK/wikis/home).
......@@ -29,159 +28,29 @@ To start working on Shark you need a so-called **LUMC Research account* ***. Due
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[Apply for an Account](Apply_for_an_Account).
[Apply for an Account](https://git.lumc.nl/mwjhhuijberts/Shark4FSW/wikis/apply_for_an_account).
Which information do you need, and where to apply. More details on the process.
When you apply for an account the Shark Introduction Course is mandatory.
-----
[Shark Introduction Course](Shark_Introduction_Course).
[Shark Introduction Course](https://git.lumc.nl/mwjhhuijberts/Shark4FSW/wikis/shark_introduction_course).
Information about the Shark Introduction Course and other courses.
Once you have an account and did the course you need login.
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[How to Connect](How_to_Connect).
[How to Connect](https://git.lumc.nl/mwjhhuijberts/Shark4FSW/wikis/how_to_connect).
Practical information about the LUMC Research account and how to connect to Shark from different networks on Windows, Mac and Linux. Information about the jumpserver and the password.
Ater connecting to Shark, you want to start using software on a cluster.
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[Software](Software).
[Software](https://git.lumc.nl/mwjhhuijberts/Shark4FSW/wikis/software).
Information about the available software and how to use it with an cluster queue, together with how to apply new software or libaries. Information about the `module` tool, to use different versions of the same software.
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[Storage](Storage).
[Storage](https://git.lumc.nl/mwjhhuijberts/Shark4FSW/wikis/storage).
Information about the storage. where to store your data on the cluster. And how to connect to the storage.
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<details open>
<summary>Apply for an Account</summary>
<p>
Roadmap:
1. Gather the following information (if applicable):
- Your e-mailaddress from FSW (or student address).
- The purpose of using Shark (which software etc. is requested).
- The information about your 'normal' LUMC account.
- Which research group you want to join.
- The name of a new group, with the members.
See [ResearchGroups](ResearchGroups) for an overview of available research groups.
2. Send the information to <m.huijberts@lumc.nl>.
- The information will processed and you will get an invitation for attending the mandatory Shark introduction course given by Michel Villerius. For more information about the course see: [Shark Introduction Course](https://git.lumc.nl/shark/SHARK/wikis/Intro_course) and the [Shark Introduction Course schedule](https://git.lumc.nl/shark/SHARK/wikis/Intro_schedule_2017)
3. After attending the course you can start using Shark.
Best practices:
1. Get some basic Linux knowledge. See also next topic.
2. It is advised to get some understanding of the concepts of a computer cluster with a queue-ing system.
3. Maintaining the password.
- Change it every 3 months. (at least 8 characters with capitals )
- To see when your password expired use the command `AD-pwd-expiration.sh` on command-line of Shark.
4. Changing the password.
When your password is not expired you can change the password via:
- You can use the URL [Change LUMC Research Account Password](https://passwd.researchlumc.nl/RDWeb/Pages/en-US/password.aspx)
- type `passwd` on command-line of Shark and follow the instructions.
See also [Changepasswd](https://git.lumc.nl/shark/SHARK/wikis/ChangePasswd)
~~Request an account (what info needed?, call? mail address? single user of ook toegang tot groepen, zelf nw groep aanmaken?) Wat gebeurt er als je geen 0-aanstelling hebt bij LUMC? Studenten? verschil LUMCNET versus RESEARCHNET account, tijdig wachtwoord verlengen, handige tips misschien?
Do the course ... Frequency...~~
</p>
</details>
_ _ _
<details open>
<summary>Courses</summary>
Information about available courses.
</details>
_ _ _
<details open>
<summary>How to connect and start using Shark</summary>
The procedure to connect to Shark depends on your location and the computer you are using
In FSW building and wire connected to FSW outlet
Hier uitleggen hoe toegang to bring-your-own device network
In LUMC
Linkje naar andere pagina?
In FSW using wifi or elsewhere on the internet
via de jumpserver
<details open>
<summary>Windows</summary>
Here info for Windows users
</details>
<details open>
<summary>Mac</summary>
Here info for Mac users
</details>
<details open>
<summary>Linux</summary>
Here info for Linux users
</details>
These are not the only ways to connect. You might use an alternative way. But
</details>
_ _ _
<details open>
<summary>Available Software</summary>
Here information about available software?
</details>
_ _ _
<details open>
<summary>How to use: `module load`, for a specific version</summary>
module load
</details>
_ _ _
<details open>
<summary>(Extra) Software</summary>
Information about what to do when you need extra software?
</details>
_ _ _
<details open>
<summary>(Extra) Storage</summary>
data moet opgeslagen worden op exports/fsw. Vraag: mag iedereen daar zomaar allemaal mappen aanhouden of willen jullie juist per persoon of groep mappen maken?
when a project is finished, data should be backupped to the J-drive and removed from the /exports/fsw folder.
</details>
_ _ _
[^LUMC_Research_Account]:
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