submitBatchJob error
Created by: peich69
Hi there, I have write a simple perl script to: -Check syntaxis of al my variants -Get g. and p. nomenclature. First part is done, using 'https://mutalyzer.nl/json/checkSyntax?&variant=NM_000XXX.X:c.000A>T' the script makes a bucle over all variants and the ones that returns true, are saved into a file 'test.txt' with the format
NM_000XXX.X:c.000A>T NM_000XXX.X:c.000A>T NM_000XXX.X:c.000A>T
This part goes right. Now for testing, I'm using the file batchtestnew.txt for the second part. I'm trying to do the second part with 'https://mutalyzer.nl/json/submitBatchJob?data='.encode_base64(batchtestnew.txt).'&process=NameChecker' I get the response "343067f0-f71b-4e0c-94cb-8e22e10711a5" and then I use 'https://mutalyzer.nl/batch-job-result/batch-job-343067f0-f71b-4e0c-94cb-8e22e10711a5.txt' The message I get is Input Errors and warnings AccNo Genesymbol Variant Reference Sequence Start Descr. Coding DNA Descr. Protein Descr. GeneSymbol Coding DNA Descr. GeneSymbol Protein Descr. Genomic Reference Coding Reference Protein Reference Affected Transcripts Affected Proteins Restriction Sites Created Restriction Sites Deleted C:\batchtestnew.txt (grammar): Expected W:(0123...) (at char 1), (line:1, col:2) I don't understand what I'm doing wrong. I'm using a tutorial file so I assume that the file structure is not the problem. Any suggestion? Thanks