Handle circular reference sequences
Created by: mutalyzerbot
Original ticket: https://humgenprojects.lumc.nl/trac/mutalyzer/ticket/122 Original date: 2012/10/30 Original reporter: martijn
Example use case 1: deletion of 16564_12 on mtDNA cannot currently be described as one deletion in Mutalyzer.
Example use case 1: NC_012920.1:m.1del should be corrected to NC_012920.1:m.16569del (by rolling, both positions are G).
This would require some work. One possible implementation:
- Renumber user input (e.g. 16564_12del to 16564_16581del).
- Have Mutalyzer work with an 'extended' reference sequence.
- Renumber for user output (e.g. 16564_16581del to 16564_12del).